Atomistry » Sodium » PDB 6zl3-7c67 » 7c65
Atomistry »
  Sodium »
    PDB 6zl3-7c67 »
      7c65 »

Sodium in PDB 7c65: Crystal Structure of Thioredoxin M1

Protein crystallography data

The structure of Crystal Structure of Thioredoxin M1, PDB code: 7c65 was solved by G.Kurisu, L.Juniar, H.Tanaka, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.68 / 1.10
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 24.004, 64.333, 29.487, 90.00, 96.01, 90.00
R / Rfree (%) n/a / n/a

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Thioredoxin M1 (pdb code 7c65). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Thioredoxin M1, PDB code: 7c65:

Sodium binding site 1 out of 1 in 7c65

Go back to Sodium Binding Sites List in 7c65
Sodium binding site 1 out of 1 in the Crystal Structure of Thioredoxin M1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Thioredoxin M1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:28.9
occ:1.00
O A:LYS53 2.7 21.3 1.0
O A:ALA55 2.8 25.7 1.0
NE2 A:GLN57 3.0 22.4 1.0
C A:TYR54 3.3 17.1 1.0
CA A:TYR54 3.4 16.6 1.0
N A:ALA55 3.5 20.2 1.0
CG A:GLN57 3.6 20.4 1.0
C A:LYS53 3.7 18.4 1.0
O A:TYR54 3.7 16.6 1.0
CD A:GLN57 3.7 20.9 1.0
C A:ALA55 3.8 24.3 1.0
N A:TYR54 4.0 16.1 1.0
O A:HOH339 4.2 33.2 1.0
CA A:ALA55 4.3 22.9 1.0
O A:HOH407 4.4 34.7 1.0
CB A:GLN57 4.4 18.8 1.0
N A:GLN57 4.6 19.0 1.0
CB A:TYR54 4.7 15.0 1.0
N A:GLY56 4.9 25.7 1.0
OE1 A:GLN57 4.9 21.9 1.0

Reference:

L.Juniar, H.Tanaka, K.Yoshida, T.Hisabori, G.Kurisu. Structural Basis For Thioredoxin Isoform-Based Fine-Tuning of Ferredoxin-Thioredoxin Reductase Activity. Protein Sci. V. 29 2538 2020.
ISSN: ESSN 1469-896X
PubMed: 33015914
DOI: 10.1002/PRO.3964
Page generated: Tue Dec 15 17:35:16 2020

Last articles

Tb in 6TVY
Si in 6Y7O
Rh in 6WRM
Rh in 6WRL
Ni in 6Y8Z
Ni in 6Y8Y
Na in 6ZXZ
Na in 7ACG
Na in 6YLS
Na in 6Y8Z
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy