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Sodium in PDB 7bu6: Structure of Human BETA1 Adrenergic Receptor Bound to Norepinephrine and Nanobody 6B9

Enzymatic activity of Structure of Human BETA1 Adrenergic Receptor Bound to Norepinephrine and Nanobody 6B9

All present enzymatic activity of Structure of Human BETA1 Adrenergic Receptor Bound to Norepinephrine and Nanobody 6B9:
3.2.1.17;

Protein crystallography data

The structure of Structure of Human BETA1 Adrenergic Receptor Bound to Norepinephrine and Nanobody 6B9, PDB code: 7bu6 was solved by X.Xu, J.Kaindl, M.Clark, H.Hubner, K.Hirata, R.Sunahara, P.Gmeiner, B.K.Kobilka, X.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.98 / 2.70
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 376.779, 66.009, 47.841, 90.00, 93.46, 90.00
R / Rfree (%) 23.2 / 25.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Human BETA1 Adrenergic Receptor Bound to Norepinephrine and Nanobody 6B9 (pdb code 7bu6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Human BETA1 Adrenergic Receptor Bound to Norepinephrine and Nanobody 6B9, PDB code: 7bu6:

Sodium binding site 1 out of 1 in 7bu6

Go back to Sodium Binding Sites List in 7bu6
Sodium binding site 1 out of 1 in the Structure of Human BETA1 Adrenergic Receptor Bound to Norepinephrine and Nanobody 6B9


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Human BETA1 Adrenergic Receptor Bound to Norepinephrine and Nanobody 6B9 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1410

b:45.6
occ:1.00
O A:ASP1212 2.3 46.8 1.0
O A:CYS1215 2.4 42.6 1.0
O A:CYS1209 2.4 51.1 1.0
O A:HOH1503 2.4 38.8 1.0
O A:HOH1502 2.5 46.9 1.0
O A:HOH1501 2.7 50.0 1.0
C A:ASP1212 3.3 49.6 1.0
C A:CYS1215 3.5 42.5 1.0
C A:CYS1209 3.6 50.3 1.0
O A:TYR1210 3.6 53.6 1.0
CA A:PRO1213 3.9 47.5 1.0
C A:TYR1210 4.0 51.9 1.0
N A:PRO1213 4.0 51.4 1.0
CA A:TYR1210 4.0 43.9 1.0
N A:CYS1215 4.1 45.2 1.0
C A:PRO1213 4.1 51.5 1.0
N A:ASP1212 4.1 47.9 1.0
CA A:CYS1215 4.2 44.0 1.0
O A:PRO1213 4.2 55.2 1.0
CB A:CYS1215 4.2 41.1 1.0
CA A:ASP1212 4.3 47.5 1.0
N A:TYR1210 4.3 48.6 1.0
OG A:SER1128 4.4 49.3 1.0
SG A:CYS1209 4.5 66.0 1.0
N A:CYS1216 4.6 43.9 1.0
CA A:CYS1209 4.7 45.9 1.0
CB A:ASP1212 4.8 42.7 1.0
N A:ASN1211 4.8 46.2 1.0
SG A:CYS1131 4.9 40.6 1.0
CA A:CYS1216 4.9 48.1 1.0
N A:LYS1214 4.9 43.8 1.0
C A:ASN1211 4.9 50.9 1.0

Reference:

X.Xu, J.Kaindl, M.J.Clark, H.Hubner, K.Hirata, R.K.Sunahara, P.Gmeiner, B.K.Kobilka, X.Liu. Binding Pathway Determines Norepinephrine Selectivity For the Human Beta 1 Ar Over Beta 2 Ar. Cell Res. 2020.
ISSN: ISSN 1001-0602
PubMed: 33093660
DOI: 10.1038/S41422-020-00424-2
Page generated: Tue Dec 15 17:31:00 2020

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