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Sodium in PDB 7bov: The Structure of Bacillus Subtilis Glycosyltransferase,Bs-Yjic

Protein crystallography data

The structure of The Structure of Bacillus Subtilis Glycosyltransferase,Bs-Yjic, PDB code: 7bov was solved by C.Zhao, B.Liu, N.L.Zhao, Y.Z.Luo, R.Bao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.62 / 2.29
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 51.882, 118.433, 184.098, 90.00, 90.00, 90.00
R / Rfree (%) 23.4 / 26.6

Sodium Binding Sites:

The binding sites of Sodium atom in the The Structure of Bacillus Subtilis Glycosyltransferase,Bs-Yjic (pdb code 7bov). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Structure of Bacillus Subtilis Glycosyltransferase,Bs-Yjic, PDB code: 7bov:

Sodium binding site 1 out of 1 in 7bov

Go back to Sodium Binding Sites List in 7bov
Sodium binding site 1 out of 1 in the The Structure of Bacillus Subtilis Glycosyltransferase,Bs-Yjic


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Structure of Bacillus Subtilis Glycosyltransferase,Bs-Yjic within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na401

b:97.3
occ:1.00
OD2 A:ASP326 3.7 62.8 1.0
O A:TYR333 4.0 29.5 1.0
CD2 A:TYR333 4.2 41.2 1.0
CG A:ASP326 4.3 54.4 1.0
O A:HOH538 4.3 64.6 1.0
CB A:TYR333 4.3 29.0 1.0
CG A:TYR333 4.4 33.0 1.0
OD1 A:ASP326 4.6 64.4 1.0
C A:TYR333 4.9 41.6 1.0
CE2 A:TYR333 4.9 38.8 1.0

Reference:

C.Zhao, N.L.Zhao, R.Bao. Structural of the Glycosyltransferase Bs-Yjic From Bacillus Subtilis To Be Published.
Page generated: Tue Dec 15 17:29:10 2020

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