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Sodium in PDB 7bmo: Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer)

Protein crystallography data

The structure of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer), PDB code: 7bmo was solved by W.Koelmel, J.Kuper, C.Kisker, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.31 / 1.90
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.628, 78.628, 36.755, 90, 90, 90
R / Rfree (%) 20.8 / 25.4

Other elements in 7bmo:

The structure of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer) also contains other interesting chemical elements:

Chlorine (Cl) 8 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer) (pdb code 7bmo). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer), PDB code: 7bmo:

Sodium binding site 1 out of 1 in 7bmo

Go back to Sodium Binding Sites List in 7bmo
Sodium binding site 1 out of 1 in the Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hewl in Cesium Chloride (0.25 M Cscl in Protein Buffer) within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na209

b:23.8
occ:1.00
O A:SER78 2.3 19.5 1.0
O A:HOH369 2.3 19.6 1.0
O A:HOH350 2.4 16.8 1.0
O A:CYS82 2.4 19.1 1.0
OG A:SER90 2.5 25.7 1.0
O A:ARG91 2.6 20.9 1.0
CB A:SER90 3.3 23.4 1.0
C A:SER78 3.4 18.9 1.0
C A:CYS82 3.5 17.8 1.0
C A:ARG91 3.6 22.2 1.0
CA A:ASN83 3.9 19.6 1.0
N A:ARG91 4.0 23.0 1.0
CA A:SER78 4.0 18.2 1.0
N A:ASN83 4.1 19.7 1.0
C A:SER90 4.2 24.8 1.0
CB A:SER78 4.2 17.4 1.0
CA A:SER90 4.4 24.8 1.0
CA A:ARG91 4.4 22.1 1.0
N A:ASN92 4.4 21.2 1.0
O A:ARG79 4.5 22.4 1.0
N A:ARG79 4.5 22.3 1.0
N A:ASP84 4.5 17.2 1.0
N A:CYS82 4.5 18.1 1.0
OD1 A:ASN83 4.6 22.1 1.0
CB A:THR87 4.6 20.6 1.0
CA A:ASN92 4.6 22.4 1.0
CA A:CYS82 4.6 18.7 1.0
CL A:CL203 4.6 23.4 0.9
C A:ARG79 4.7 23.0 1.0
CB A:ASN92 4.7 23.5 1.0
O A:SER90 4.7 23.1 1.0
C A:ASN83 4.7 17.3 1.0
CB A:ASN83 4.8 20.5 1.0
O A:HOH412 4.8 33.8 1.0
CA A:ARG79 4.9 24.8 1.0
OG1 A:THR87 4.9 20.4 1.0
O A:HOH400 5.0 30.8 1.0

Reference:

W.Koelmel, J.Kuper, C.Kisker. Cesium Based Phasing of Macromolecules: A General Easy to Use Approach For Solving the Phase Problem. Sci Rep V. 11 17038 2021.
ISSN: ESSN 2045-2322
PubMed: 34426585
DOI: 10.1038/S41598-021-95186-1
Page generated: Fri Nov 5 16:03:12 2021

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