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Sodium in PDB 7bhl: Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.2 S Mixing with N-Acetyl-D-Glucosamine.

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.2 S Mixing with N-Acetyl-D-Glucosamine.

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.2 S Mixing with N-Acetyl-D-Glucosamine.:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.2 S Mixing with N-Acetyl-D-Glucosamine., PDB code: 7bhl was solved by A.Butryn, A.M.Orville, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.23 / 1.45
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.804, 78.804, 38.002, 90, 90, 90
R / Rfree (%) 19.7 / 21.1

Other elements in 7bhl:

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.2 S Mixing with N-Acetyl-D-Glucosamine. also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.2 S Mixing with N-Acetyl-D-Glucosamine. (pdb code 7bhl). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.2 S Mixing with N-Acetyl-D-Glucosamine., PDB code: 7bhl:

Sodium binding site 1 out of 1 in 7bhl

Go back to Sodium Binding Sites List in 7bhl
Sodium binding site 1 out of 1 in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.2 S Mixing with N-Acetyl-D-Glucosamine.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method - 0.2 S Mixing with N-Acetyl-D-Glucosamine. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:27.4
occ:1.00
 O A:SER60 2.3 25.0 1.0
O A:CYS64 2.4 22.0 1.0
O A:HOH368 2.4 31.6 1.0
O A:ARG73 2.5 33.2 1.0
OG A:SER72 2.5 31.6 1.0
O A:HOH339 2.6 28.9 1.0
CB A:SER72 3.3 26.4 1.0
C A:CYS64 3.4 18.5 1.0
C A:SER60 3.5 21.3 1.0
C A:ARG73 3.5 32.3 1.0
CA A:ASN65 3.9 23.9 1.0
N A:ARG73 4.0 27.6 1.0
C A:SER72 4.1 34.4 1.0
N A:ASN65 4.1 21.4 1.0
CA A:SER60 4.1 17.7 1.0
CA A:SER72 4.3 29.2 1.0
CB A:SER60 4.3 17.8 1.0
N A:CYS64 4.4 20.4 1.0
N A:ASN74 4.4 28.2 1.0
CA A:ARG73 4.4 34.9 1.0
C A:ARG61 4.5 26.2 1.0
O A:SER72 4.5 32.2 1.0
CA A:ASN74 4.5 25.1 1.0
O A:ARG61 4.6 27.4 1.0
CA A:CYS64 4.6 21.3 1.0
N A:ARG61 4.6 21.2 1.0
CL A:CL203 4.7 41.5 1.0
CB A:ASN74 4.7 25.1 1.0
CB A:THR69 4.7 24.2 1.0
OD1 A:ASN65 4.7 31.1 1.0
N A:ASP66 4.7 18.5 1.0
CA A:ARG61 4.8 28.0 1.0
CB A:ASN65 4.8 22.2 1.0
N A:TRP62 4.8 22.8 1.0
O A:THR69 4.9 32.8 1.0
C A:ASN65 4.9 19.3 1.0
N A:TRP63 5.0 20.9 1.0

Reference:

A.Butryn, P.S.Simon, P.Aller, P.Hinchliffe, R.N.Massad, G.Leen, C.L.Tooke, I.Bogacz, I.-S.Kim, A.Bhowmick, A.S.Brewster, N.E.Devenish, J.Brem, J.J.A.G.Kamps, P.A.Lang, P.Rabe, D.Axford, J.H.Beale, B.Davy, A.Ebrahim, J.Orlans, S.L.S.Storm, T.Zhou, S.Owada, R.Tanaka, K.Tono, G.Evans, R.L.Owen, F.A.Houle, N.K.Sauter, C.J.Schofield, J.Spencer, V.K.Yachandra, J.Yano, J.F.Kern, A.M.Orville. An on-Demand, Drop-on-Drop Method For Studying Enzyme Catalysis By Serial Crystallography. To Be Published.
Page generated: Tue Oct 8 16:13:38 2024

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