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Sodium in PDB 7bhk: Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method.

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method.

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method.:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method., PDB code: 7bhk was solved by A.Butryn, A.M.Orville, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.23 / 1.45
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.804, 78.804, 38.002, 90, 90, 90
R / Rfree (%) 19.4 / 21.4

Other elements in 7bhk:

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method. also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method. (pdb code 7bhk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method., PDB code: 7bhk:

Sodium binding site 1 out of 1 in 7bhk

Go back to Sodium Binding Sites List in 7bhk
Sodium binding site 1 out of 1 in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:28.0
occ:1.00
 O A:SER60 2.4 25.9 1.0
O A:HOH359 2.4 31.8 1.0
O A:CYS64 2.5 23.3 1.0
OG A:SER72 2.5 31.1 1.0
O A:HOH332 2.5 29.0 1.0
O A:ARG73 2.5 32.5 1.0
CB A:SER72 3.3 28.5 1.0
C A:CYS64 3.5 19.5 1.0
C A:SER60 3.5 21.0 1.0
C A:ARG73 3.5 32.2 1.0
CA A:ASN65 3.9 24.2 1.0
N A:ARG73 4.0 28.3 1.0
C A:SER72 4.0 34.4 1.0
N A:ASN65 4.1 20.4 1.0
CA A:SER60 4.2 20.1 1.0
CA A:SER72 4.3 29.9 1.0
CB A:SER60 4.4 19.8 1.0
CA A:ARG73 4.4 31.5 1.0
N A:ASN74 4.4 28.2 1.0
N A:CYS64 4.5 21.2 1.0
O A:SER72 4.5 33.3 1.0
C A:ARG61 4.5 26.1 1.0
O A:ARG61 4.5 26.8 1.0
CA A:ASN74 4.6 25.9 1.0
N A:ARG61 4.6 21.3 1.0
CA A:CYS64 4.6 20.5 1.0
CB A:THR69 4.7 23.9 1.0
O A:HOH381 4.7 40.3 1.0
CL A:CL203 4.7 43.7 1.0
N A:ASP66 4.7 19.9 1.0
CB A:ASN74 4.7 25.1 1.0
OD1 A:ASN65 4.7 33.0 1.0
CA A:ARG61 4.8 28.4 1.0
CB A:ASN65 4.8 24.2 1.0
N A:TRP62 4.8 24.8 1.0
O A:THR69 4.8 31.2 1.0
C A:ASN65 4.9 21.8 1.0

Reference:

A.Butryn, P.S.Simon, P.Aller, P.Hinchliffe, R.N.Massad, G.Leen, C.L.Tooke, I.Bogacz, I.-S.Kim, A.Bhowmick, A.S.Brewster, N.E.Devenish, J.Brem, J.J.A.G.Kamps, P.A.Lang, P.Rabe, D.Axford, J.H.Beale, B.Davy, A.Ebrahim, J.Orlans, S.L.S.Storm, T.Zhou, S.Owada, R.Tanaka, K.Tono, G.Evans, R.L.Owen, F.A.Houle, N.K.Sauter, C.J.Schofield, J.Spencer, V.K.Yachandra, J.Yano, J.F.Kern, A.M.Orville. An on-Demand, Drop-on-Drop Method For Studying Enzyme Catalysis By Serial Crystallography. To Be Published.
Page generated: Tue Oct 8 16:13:28 2024

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