Atomistry » Sodium » PDB 7b7h-7bov » 7bhk
Atomistry »
  Sodium »
    PDB 7b7h-7bov »
      7bhk »

Sodium in PDB 7bhk: Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method.

Enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method.

All present enzymatic activity of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method.:
3.2.1.17;

Protein crystallography data

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method., PDB code: 7bhk was solved by A.Butryn, A.M.Orville, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.23 / 1.45
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.804, 78.804, 38.002, 90, 90, 90
R / Rfree (%) 19.4 / 21.4

Other elements in 7bhk:

The structure of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method. also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method. (pdb code 7bhk). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method., PDB code: 7bhk:

Sodium binding site 1 out of 1 in 7bhk

Go back to Sodium Binding Sites List in 7bhk
Sodium binding site 1 out of 1 in the Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hen Egg White Lysozyme Using Drop-on-Drop Sfx Method. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:28.0
occ:1.00
 O A:SER60 2.4 25.9 1.0
O A:HOH359 2.4 31.8 1.0
O A:CYS64 2.5 23.3 1.0
OG A:SER72 2.5 31.1 1.0
O A:HOH332 2.5 29.0 1.0
O A:ARG73 2.5 32.5 1.0
CB A:SER72 3.3 28.5 1.0
C A:CYS64 3.5 19.5 1.0
C A:SER60 3.5 21.0 1.0
C A:ARG73 3.5 32.2 1.0
CA A:ASN65 3.9 24.2 1.0
N A:ARG73 4.0 28.3 1.0
C A:SER72 4.0 34.4 1.0
N A:ASN65 4.1 20.4 1.0
CA A:SER60 4.2 20.1 1.0
CA A:SER72 4.3 29.9 1.0
CB A:SER60 4.4 19.8 1.0
CA A:ARG73 4.4 31.5 1.0
N A:ASN74 4.4 28.2 1.0
N A:CYS64 4.5 21.2 1.0
O A:SER72 4.5 33.3 1.0
C A:ARG61 4.5 26.1 1.0
O A:ARG61 4.5 26.8 1.0
CA A:ASN74 4.6 25.9 1.0
N A:ARG61 4.6 21.3 1.0
CA A:CYS64 4.6 20.5 1.0
CB A:THR69 4.7 23.9 1.0
O A:HOH381 4.7 40.3 1.0
CL A:CL203 4.7 43.7 1.0
N A:ASP66 4.7 19.9 1.0
CB A:ASN74 4.7 25.1 1.0
OD1 A:ASN65 4.7 33.0 1.0
CA A:ARG61 4.8 28.4 1.0
CB A:ASN65 4.8 24.2 1.0
N A:TRP62 4.8 24.8 1.0
O A:THR69 4.8 31.2 1.0
C A:ASN65 4.9 21.8 1.0

Reference:

A.Butryn, P.S.Simon, P.Aller, P.Hinchliffe, R.N.Massad, G.Leen, C.L.Tooke, I.Bogacz, I.-S.Kim, A.Bhowmick, A.S.Brewster, N.E.Devenish, J.Brem, J.J.A.G.Kamps, P.A.Lang, P.Rabe, D.Axford, J.H.Beale, B.Davy, A.Ebrahim, J.Orlans, S.L.S.Storm, T.Zhou, S.Owada, R.Tanaka, K.Tono, G.Evans, R.L.Owen, F.A.Houle, N.K.Sauter, C.J.Schofield, J.Spencer, V.K.Yachandra, J.Yano, J.F.Kern, A.M.Orville. An on-Demand, Drop-on-Drop Method For Studying Enzyme Catalysis By Serial Crystallography. To Be Published.
Page generated: Tue Oct 8 16:13:28 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy