Sodium in PDB 7bew: Glyceraldehyde 3-Phosphate Dehydrogenase From Campylobacter Jejeuni - Nad(P) Complex

All present enzymatic activity of Glyceraldehyde 3-Phosphate Dehydrogenase From Campylobacter Jejeuni - Nad(P) Complex:
1.2.1.12; 1.2.1.13; 1.2.1.5;

The structure of Glyceraldehyde 3-Phosphate Dehydrogenase From Campylobacter Jejeuni - Nad(P) Complex, PDB code: 7bew was solved by P.C.E.Moody, A.Ayna, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.80 / 2.25
Space group	I 41 2 2
Cell size a, b, c (Å), α, β, γ (°)	90.81, 90.81, 224.8, 90, 90, 90
R / Rfree (%)	16.3 / 21.2

The binding sites of Sodium atom in the Glyceraldehyde 3-Phosphate Dehydrogenase From Campylobacter Jejeuni - Nad(P) Complex (pdb code 7bew). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Glyceraldehyde 3-Phosphate Dehydrogenase From Campylobacter Jejeuni - Nad(P) Complex, PDB code: 7bew:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Glyceraldehyde 3-Phosphate Dehydrogenase From Campylobacter Jejeuni - Nad(P) Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Glyceraldehyde 3-Phosphate Dehydrogenase From Campylobacter Jejeuni - Nad(P) Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:47.6 occ:1.00 O A:ARG197 2.6 16.8 1.0 O A:ARG195 2.6 24.8 1.0 N A:SER184 3.1 29.0 1.0 C A:ARG195 3.4 29.5 1.0 NE2 A:GLN183 3.6 27.6 1.0 CG A:GLN183 3.6 30.3 1.0 CB A:GLN183 3.6 28.7 1.0 CA A:GLN183 3.7 31.6 1.0 O A:SER184 3.7 26.1 1.0 C A:ARG197 3.7 18.0 1.0 OG A:SER184 3.7 34.0 1.0 C A:GLN183 3.8 32.1 1.0 N A:ARG197 3.8 19.5 1.0 CA A:ARG195 3.9 32.8 1.0 CD1 A:ILE204 4.0 14.8 1.0 CD A:GLN183 4.1 28.2 1.0 CA A:SER184 4.1 28.8 1.0 O A:ARG194 4.2 22.4 1.0 CB A:ALA199 4.2 19.8 1.0 C A:SER196 4.3 23.4 1.0 N A:ALA199 4.3 18.3 1.0 C A:SER184 4.4 26.0 1.0 CA A:ARG197 4.4 19.6 1.0 N A:SER196 4.4 26.0 1.0 CB A:SER184 4.4 29.4 1.0 CA A:ALA199 4.5 18.7 1.0 CG A:ARG195 4.7 52.4 1.0 N A:ALA198 4.8 17.6 1.0 CA A:SER196 4.8 25.1 1.0 C A:ALA198 4.8 18.2 1.0 CB A:ARG195 4.9 40.3 1.0 N A:ARG195 4.9 26.3 1.0 O A:GLN183 4.9 34.9 1.0 C A:ARG194 5.0 22.8 1.0

Sodium binding site 2 out of 2 in the Glyceraldehyde 3-Phosphate Dehydrogenase From Campylobacter Jejeuni - Nad(P) Complex


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Glyceraldehyde 3-Phosphate Dehydrogenase From Campylobacter Jejeuni - Nad(P) Complex within 5.0Å range: probe atom residue distance (Å) B Occ A:Na404 b:36.8 occ:1.00 O A:ARG24 2.4 32.6 1.0 O A:ILE27 2.5 20.3 1.0 O A:ILE21 2.5 23.5 1.0 O A:HOH633 3.2 22.2 1.0 C A:ILE21 3.5 23.0 1.0 C A:ARG24 3.6 29.4 1.0 C A:ILE27 3.6 19.4 1.0 CG2 A:ILE21 3.8 23.1 1.0 CA A:LEU22 4.1 26.2 1.0 CA A:GLU28 4.2 22.6 1.0 N A:LEU22 4.2 23.6 1.0 N A:ARG24 4.3 28.9 1.0 N A:GLU28 4.3 22.0 1.0 C A:LEU22 4.4 26.3 1.0 CA A:ARG24 4.5 29.3 1.0 CA A:ILE21 4.5 21.9 1.0 O A:LEU22 4.5 25.7 1.0 N A:ASN25 4.6 29.5 1.0 CA A:ASN25 4.7 33.8 1.0 N A:ILE27 4.7 21.8 1.0 CG2 A:ILE27 4.7 23.0 1.0 CA A:ILE27 4.8 21.1 1.0 CB A:ILE21 4.8 22.5 1.0 CB A:GLU28 5.0 24.4 1.0

A.Ayna, P.C.E.Moody. Crystal Structures of A Dual Coenzyme Specific Glyceraldehyde-3-Phosphate Dehydrogenase From the Enteric Pathogen Campylobacter Jejuni To Be Published.