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Sodium in PDB 7aez: Crystal Structure of the Metallo-Beta-Lactamase Ndm-7 with 407

Protein crystallography data

The structure of Crystal Structure of the Metallo-Beta-Lactamase Ndm-7 with 407, PDB code: 7aez was solved by J.Brem, C.J.Schofield, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.72 / 1.02
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 41.746, 58.736, 83.897, 90, 90, 90
R / Rfree (%) 10.4 / 11.3

Other elements in 7aez:

The structure of Crystal Structure of the Metallo-Beta-Lactamase Ndm-7 with 407 also contains other interesting chemical elements:

Zinc (Zn) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Metallo-Beta-Lactamase Ndm-7 with 407 (pdb code 7aez). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Metallo-Beta-Lactamase Ndm-7 with 407, PDB code: 7aez:

Sodium binding site 1 out of 1 in 7aez

Go back to Sodium Binding Sites List in 7aez
Sodium binding site 1 out of 1 in the Crystal Structure of the Metallo-Beta-Lactamase Ndm-7 with 407


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Metallo-Beta-Lactamase Ndm-7 with 407 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na307

b:17.9
occ:1.00
H A:LYS242 2.1 10.5 1.0
HA A:PHE240 2.6 9.0 1.0
HB2 A:LYS242 2.6 12.2 1.0
O A:HOH707 2.7 19.5 1.0
HD2 A:PRO241 2.7 10.5 1.0
O A:HOH626 2.8 13.8 0.5
N A:LYS242 2.9 8.7 1.0
C A:PHE240 3.1 8.0 1.0
HG3 A:LYS242 3.2 14.4 1.0
CA A:PHE240 3.2 7.5 1.0
N A:PRO241 3.2 8.3 1.0
CB A:LYS242 3.3 10.2 1.0
H A:ALA243 3.4 10.5 1.0
CD A:PRO241 3.4 8.8 1.0
HB3 A:PHE240 3.4 9.4 1.0
O A:HOH649 3.5 25.9 0.5
CA A:LYS242 3.6 9.3 1.0
O A:PHE240 3.6 8.0 1.0
CG A:LYS242 3.7 12.0 1.0
HG2 A:PRO241 3.8 11.5 1.0
HD1 A:PHE240 3.8 10.0 1.0
N A:ALA243 3.8 8.7 1.0
HD2 A:LYS242 3.8 19.1 1.0
O A:HOH465 3.8 16.9 1.0
CB A:PHE240 3.9 7.8 1.0
C A:PRO241 3.9 8.3 1.0
C A:LYS242 4.1 9.5 1.0
CA A:PRO241 4.1 8.7 1.0
CG A:PRO241 4.1 9.6 1.0
HB3 A:LYS242 4.2 12.2 1.0
HD3 A:PRO241 4.2 10.5 1.0
HB2 A:ALA243 4.3 11.7 1.0
CD A:LYS242 4.3 15.9 1.0
O A:HOH626 4.4 18.8 0.5
N A:PHE240 4.4 7.6 1.0
O A:ALA239 4.4 8.5 1.0
HA A:LYS242 4.5 11.2 1.0
O A:HOH606 4.5 39.1 1.0
CD1 A:PHE240 4.5 8.3 1.0
HG2 A:LYS242 4.5 14.4 1.0
HB2 A:PHE240 4.6 9.4 1.0
O A:HOH667 4.6 35.0 1.0
O A:HOH727 4.7 29.1 1.0
CG A:PHE240 4.7 7.6 1.0
CB A:PRO241 4.9 9.8 1.0
CA A:ALA243 4.9 8.9 1.0
HA A:PRO241 4.9 10.5 1.0
C A:ALA239 4.9 8.0 1.0
HG3 A:PRO241 4.9 11.5 1.0
CB A:ALA243 4.9 9.8 1.0

Reference:

J.Brem, C.J.Schofield. Not Available Yet To Be Published.
Page generated: Fri Nov 5 16:01:50 2021

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