Sodium in PDB 7a70: Hew Lysozyme in Complex with Ti(Oh)4

Enzymatic activity of Hew Lysozyme in Complex with Ti(Oh)4

All present enzymatic activity of Hew Lysozyme in Complex with Ti(Oh)4:
3.2.1.17;

Protein crystallography data

The structure of Hew Lysozyme in Complex with Ti(Oh)4, PDB code: 7a70 was solved by V.Calderone, L.Gigli, E.Ravera, C.Luchinat, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.61 / 1.80
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.09, 78.09, 37.29, 90, 90, 90
R / Rfree (%) 19.4 / 23.9

Other elements in 7a70:

The structure of Hew Lysozyme in Complex with Ti(Oh)4 also contains other interesting chemical elements:

Titanium (Ti) 1 atom
Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hew Lysozyme in Complex with Ti(Oh)4 (pdb code 7a70). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hew Lysozyme in Complex with Ti(Oh)4, PDB code: 7a70:

Sodium binding site 1 out of 1 in 7a70

Go back to Sodium Binding Sites List in 7a70
Sodium binding site 1 out of 1 in the Hew Lysozyme in Complex with Ti(Oh)4


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hew Lysozyme in Complex with Ti(Oh)4 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:33.1
occ:1.00
O A:SER60 2.3 27.1 1.0
O A:HOH369 2.4 24.3 1.0
O A:HOH347 2.4 22.4 1.0
OG A:SER72 2.4 31.8 1.0
O A:CYS64 2.5 24.1 1.0
O A:ARG73 2.7 27.9 1.0
CB A:SER72 3.3 28.6 1.0
C A:SER60 3.4 26.6 1.0
C A:CYS64 3.5 23.1 1.0
C A:ARG73 3.7 27.0 1.0
CA A:ASN65 3.9 25.7 1.0
N A:ARG73 4.0 27.5 1.0
CA A:SER60 4.1 23.3 1.0
N A:ASN65 4.1 25.7 1.0
C A:SER72 4.1 34.1 1.0
CB A:SER60 4.2 24.1 1.0
CA A:SER72 4.3 34.5 1.0
CA A:ARG73 4.5 27.2 1.0
N A:ARG61 4.5 26.2 1.0
C A:ARG61 4.5 30.9 1.0
N A:ASN74 4.5 24.9 1.0
O A:ARG61 4.6 30.2 1.0
OD1 A:ASN65 4.6 32.1 1.0
N A:CYS64 4.6 21.2 1.0
CL A:CL205 4.6 38.1 1.0
CB A:THR69 4.6 27.5 1.0
N A:ASP66 4.6 23.7 1.0
CA A:ARG61 4.7 29.5 1.0
O A:SER72 4.7 29.5 1.0
CB A:ASN65 4.7 23.0 1.0
CA A:CYS64 4.7 22.4 1.0
CA A:ASN74 4.7 24.9 1.0
C A:ASN65 4.8 22.6 1.0
CB A:ASN74 4.8 25.4 1.0
N A:TRP62 4.9 29.8 1.0
OG1 A:THR69 4.9 28.4 1.0
O A:THR69 4.9 28.4 1.0

Reference:

L.Gigli, E.Ravera, V.Calderone, C.Luchinat. On the Mechanism of Bioinspired Formation of Inorganic Oxides: Structural Evidence of the Electrostatic Nature of the Interaction Between A Mononuclear Inorganic Precursor and Lysozyme. Biomolecules V. 11 2020.
ISSN: ESSN 2218-273X
PubMed: 33396930
DOI: 10.3390/BIOM11010043
Page generated: Mon Jan 25 15:51:09 2021

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