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Sodium in PDB 7a6b: 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope

Enzymatic activity of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope

All present enzymatic activity of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope:
1.16.3.1;

Sodium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 32;

Binding sites:

The binding sites of Sodium atom in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope (pdb code 7a6b). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 32 binding sites of Sodium where determined in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope, PDB code: 7a6b:
Jump to Sodium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Sodium binding site 1 out of 32 in 7a6b

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Sodium binding site 1 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:40.4
occ:1.00
 OE1 A:GLU27 2.0 37.8 1.0
O A:HOH309 2.0 45.9 1.0
OE1 A:GLU62 2.2 47.9 1.0
ND1 A:HIS65 2.5 41.4 1.0
CD A:GLU62 2.9 42.1 1.0
CD A:GLU27 3.0 37.6 1.0
OE2 A:GLU62 3.0 60.9 1.0
OE2 A:GLU27 3.3 37.7 1.0
CE1 A:HIS65 3.4 49.2 1.0
CG A:HIS65 3.5 33.7 1.0
CB A:HIS65 3.7 26.7 1.0
OE1 A:GLN141 3.8 41.7 1.0
O A:HOH331 3.9 46.5 1.0
O A:HOH310 4.1 57.0 1.0
CG A:GLU62 4.3 29.4 1.0
CG1 A:VAL110 4.3 28.9 1.0
CG A:GLU27 4.3 30.7 1.0
CA A:GLU62 4.6 22.3 1.0
NE2 A:HIS65 4.6 46.7 1.0
CD2 A:HIS65 4.6 39.0 1.0
CD A:GLN141 4.7 33.0 1.0
CB A:GLU62 4.7 24.5 1.0
CB A:GLU27 4.8 24.4 1.0

Sodium binding site 2 out of 32 in 7a6b

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Sodium binding site 2 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:50.2
occ:1.00
 O A:HOH316 2.5 58.6 1.0
OE2 A:GLU134 2.5 38.5 1.0
OE2 F:GLU134 2.5 38.5 1.0
OE2 e:GLU134 2.5 38.5 1.0
OD2 F:ASP131 3.3 48.5 1.0
OD2 A:ASP131 3.3 48.6 1.0
OD2 e:ASP131 3.3 48.5 1.0
O F:HOH423 3.5 51.6 1.0
O e:HOH423 3.5 51.6 1.0
O A:HOH324 3.5 51.6 1.0
CD A:GLU134 3.8 40.0 1.0
CD F:GLU134 3.8 40.0 1.0
CD e:GLU134 3.8 40.0 1.0
CG F:ASP131 4.4 38.1 1.0
CG A:ASP131 4.4 38.1 1.0
CG e:ASP131 4.4 38.1 1.0
OE1 A:GLU134 4.4 45.8 1.0
OE1 F:GLU134 4.4 45.7 1.0
OE1 e:GLU134 4.4 45.8 1.0
CB A:GLU134 4.7 34.9 1.0
CB e:GLU134 4.8 34.9 1.0
CB F:GLU134 4.8 34.9 1.0
CB A:ASP131 4.8 28.1 1.0
CB F:ASP131 4.8 28.1 1.0
CB e:ASP131 4.8 28.1 1.0
CG A:GLU134 4.9 37.3 1.0
CG F:GLU134 4.9 37.3 1.0
CG e:GLU134 4.9 37.3 1.0
CA F:ASP131 5.0 24.6 1.0
CA A:ASP131 5.0 24.6 1.0
CA e:ASP131 5.0 24.6 1.0

Sodium binding site 3 out of 32 in 7a6b

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Sodium binding site 3 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 3 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Na201

b:40.4
occ:1.00
 OE1 1:GLU27 2.0 37.8 1.0
O 1:HOH310 2.0 46.0 1.0
OE1 1:GLU62 2.2 47.9 1.0
ND1 1:HIS65 2.5 41.4 1.0
CD 1:GLU62 2.9 41.9 1.0
CD 1:GLU27 3.0 37.5 1.0
OE2 1:GLU62 3.0 61.0 1.0
OE2 1:GLU27 3.3 37.7 1.0
CE1 1:HIS65 3.4 49.3 1.0
CG 1:HIS65 3.5 33.7 1.0
CB 1:HIS65 3.7 26.6 1.0
OE1 1:GLN141 3.8 41.8 1.0
O 1:HOH330 3.9 46.5 1.0
O 1:HOH308 4.1 57.0 1.0
CG 1:GLU62 4.3 29.4 1.0
CG1 1:VAL110 4.3 28.8 1.0
CG 1:GLU27 4.3 30.7 1.0
CA 1:GLU62 4.6 22.3 1.0
NE2 1:HIS65 4.6 46.7 1.0
CD2 1:HIS65 4.6 39.1 1.0
CD 1:GLN141 4.7 33.0 1.0
CB 1:GLU62 4.7 24.5 1.0
CB 1:GLU27 4.8 24.4 1.0

Sodium binding site 4 out of 32 in 7a6b

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Sodium binding site 4 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 4 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
1:Na202

b:50.2
occ:1.00
 O Y:HOH414 2.4 58.4 1.0
OE2 1:GLU134 2.5 38.5 1.0
OE2 E:GLU134 2.5 38.5 1.0
OE2 Y:GLU134 2.5 38.5 1.0
OD2 1:ASP131 3.3 48.8 1.0
OD2 Y:ASP131 3.3 48.8 1.0
OD2 E:ASP131 3.3 48.7 1.0
O Y:HOH425 3.5 51.6 1.0
O E:HOH424 3.5 51.6 1.0
O 1:HOH323 3.5 51.6 1.0
CD 1:GLU134 3.8 40.0 1.0
CD E:GLU134 3.8 40.0 1.0
CD Y:GLU134 3.8 40.0 1.0
CG 1:ASP131 4.4 38.0 1.0
CG Y:ASP131 4.4 38.1 1.0
CG E:ASP131 4.4 38.0 1.0
OE1 1:GLU134 4.4 45.7 1.0
OE1 E:GLU134 4.4 45.6 1.0
OE1 Y:GLU134 4.4 45.6 1.0
CB 1:GLU134 4.7 35.0 1.0
CB E:GLU134 4.8 35.0 1.0
CB Y:GLU134 4.8 34.9 1.0
CB 1:ASP131 4.8 28.1 1.0
CB Y:ASP131 4.8 28.1 1.0
CB E:ASP131 4.8 28.1 1.0
CG 1:GLU134 4.9 37.3 1.0
CG E:GLU134 4.9 37.4 1.0
CG Y:GLU134 4.9 37.3 1.0
CA 1:ASP131 5.0 24.6 1.0
CA Y:ASP131 5.0 24.6 1.0
CA E:ASP131 5.0 24.7 1.0

Sodium binding site 5 out of 32 in 7a6b

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Sodium binding site 5 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 5 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
K:Na300

b:40.5
occ:1.00
 OE1 K:GLU27 2.0 37.8 1.0
O K:HOH410 2.0 45.9 1.0
OE1 K:GLU62 2.2 47.8 1.0
ND1 K:HIS65 2.5 41.5 1.0
CD K:GLU62 2.9 41.9 1.0
CD K:GLU27 3.0 37.6 1.0
OE2 K:GLU62 3.0 60.6 1.0
OE2 K:GLU27 3.3 37.7 1.0
CE1 K:HIS65 3.4 49.2 1.0
CG K:HIS65 3.5 33.7 1.0
CB K:HIS65 3.7 26.7 1.0
OE1 K:GLN141 3.8 41.8 1.0
O K:HOH431 3.9 46.5 1.0
O K:HOH409 4.1 57.0 1.0
CG K:GLU62 4.3 29.4 1.0
CG1 K:VAL110 4.3 28.9 1.0
CG K:GLU27 4.3 30.7 1.0
CA K:GLU62 4.6 22.3 1.0
NE2 K:HIS65 4.6 46.7 1.0
CD2 K:HIS65 4.6 39.1 1.0
CD K:GLN141 4.7 33.0 1.0
CB K:GLU62 4.7 24.5 1.0
CB K:GLU27 4.8 24.4 1.0

Sodium binding site 6 out of 32 in 7a6b

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Sodium binding site 6 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 6 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
a:Na300

b:40.5
occ:1.00
 OE1 a:GLU27 2.0 37.8 1.0
O a:HOH410 2.0 45.9 1.0
OE1 a:GLU62 2.2 47.7 1.0
ND1 a:HIS65 2.5 41.5 1.0
CD a:GLU62 2.9 41.9 1.0
CD a:GLU27 3.0 37.6 1.0
OE2 a:GLU62 3.0 60.6 1.0
OE2 a:GLU27 3.3 37.7 1.0
CE1 a:HIS65 3.4 49.2 1.0
CG a:HIS65 3.5 33.7 1.0
CB a:HIS65 3.7 26.7 1.0
OE1 a:GLN141 3.8 41.8 1.0
O a:HOH430 3.9 46.5 1.0
O a:HOH408 4.1 56.9 1.0
CG a:GLU62 4.3 29.4 1.0
CG1 a:VAL110 4.3 28.9 1.0
CG a:GLU27 4.3 30.7 1.0
CA a:GLU62 4.6 22.3 1.0
NE2 a:HIS65 4.6 46.7 1.0
CD2 a:HIS65 4.6 39.0 1.0
CD a:GLN141 4.7 33.0 1.0
CB a:GLU62 4.7 24.5 1.0
CB a:GLU27 4.8 24.4 1.0

Sodium binding site 7 out of 32 in 7a6b

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Sodium binding site 7 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 7 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na201

b:40.5
occ:1.00
 OE1 B:GLU27 2.0 37.8 1.0
O B:HOH310 2.0 45.9 1.0
OE1 B:GLU62 2.2 47.8 1.0
ND1 B:HIS65 2.5 41.5 1.0
CD B:GLU62 2.9 42.2 1.0
CD B:GLU27 3.0 37.6 1.0
OE2 B:GLU62 3.0 61.6 1.0
OE2 B:GLU27 3.3 37.7 1.0
CE1 B:HIS65 3.4 49.4 1.0
CG B:HIS65 3.5 33.8 1.0
CB B:HIS65 3.7 26.6 1.0
OE1 B:GLN141 3.8 41.8 1.0
O B:HOH331 3.9 46.5 1.0
O B:HOH309 4.1 57.0 1.0
CG B:GLU62 4.3 29.4 1.0
CG1 B:VAL110 4.3 28.9 1.0
CG B:GLU27 4.3 30.6 1.0
CA B:GLU62 4.6 22.3 1.0
NE2 B:HIS65 4.6 46.7 1.0
CD2 B:HIS65 4.6 39.1 1.0
CD B:GLN141 4.7 33.0 1.0
CB B:GLU62 4.7 24.5 1.0
CB B:GLU27 4.8 24.4 1.0

Sodium binding site 8 out of 32 in 7a6b

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Sodium binding site 8 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 8 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na202

b:50.2
occ:1.00
 O O:HOH414 2.4 58.4 1.0
OE2 O:GLU134 2.5 38.5 1.0
OE2 P:GLU134 2.5 38.5 1.0
OE2 B:GLU134 2.5 38.5 1.0
OD2 O:ASP131 3.3 48.8 1.0
OD2 B:ASP131 3.3 48.7 1.0
OD2 P:ASP131 3.3 48.7 1.0
O O:HOH424 3.5 51.6 1.0
O P:HOH422 3.5 51.6 1.0
O B:HOH323 3.5 51.6 1.0
CD O:GLU134 3.8 40.0 1.0
CD P:GLU134 3.8 40.0 1.0
CD B:GLU134 3.8 40.0 1.0
CG B:ASP131 4.4 38.0 1.0
CG O:ASP131 4.4 38.1 1.0
CG P:ASP131 4.4 38.0 1.0
OE1 O:GLU134 4.4 45.6 1.0
OE1 P:GLU134 4.4 45.7 1.0
OE1 B:GLU134 4.4 45.7 1.0
CB O:GLU134 4.8 34.9 1.0
CB B:GLU134 4.8 34.9 1.0
CB P:GLU134 4.8 34.9 1.0
CB B:ASP131 4.8 28.1 1.0
CB O:ASP131 4.8 28.1 1.0
CB P:ASP131 4.8 28.1 1.0
CG O:GLU134 4.9 37.3 1.0
CG P:GLU134 4.9 37.3 1.0
CG B:GLU134 4.9 37.3 1.0
CA B:ASP131 5.0 24.7 1.0
CA O:ASP131 5.0 24.6 1.0
CA P:ASP131 5.0 24.6 1.0

Sodium binding site 9 out of 32 in 7a6b

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Sodium binding site 9 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 9 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Na300

b:40.5
occ:1.00
 OE1 E:GLU27 2.0 37.8 1.0
O E:HOH410 2.0 45.9 1.0
OE1 E:GLU62 2.2 47.7 1.0
ND1 E:HIS65 2.5 41.5 1.0
CD E:GLU62 2.9 42.2 1.0
CD E:GLU27 3.0 37.6 1.0
OE2 E:GLU62 3.0 61.6 1.0
OE2 E:GLU27 3.3 37.7 1.0
CE1 E:HIS65 3.4 49.4 1.0
CG E:HIS65 3.5 33.7 1.0
CB E:HIS65 3.7 26.6 1.0
OE1 E:GLN141 3.8 41.8 1.0
O E:HOH430 3.9 46.5 1.0
O E:HOH409 4.1 57.0 1.0
CG E:GLU62 4.3 29.4 1.0
CG1 E:VAL110 4.3 28.9 1.0
CG E:GLU27 4.3 30.6 1.0
CA E:GLU62 4.6 22.3 1.0
NE2 E:HIS65 4.6 46.7 1.0
CD2 E:HIS65 4.6 39.1 1.0
CD E:GLN141 4.7 33.0 1.0
CB E:GLU62 4.7 24.5 1.0
CB E:GLU27 4.8 24.4 1.0

Sodium binding site 10 out of 32 in 7a6b

Go back to Sodium Binding Sites List in 7a6b
Sodium binding site 10 out of 32 in the 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 10 of 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope within 5.0Å range:
probe atom residue distance (Å) B Occ
e:Na300

b:40.5
occ:1.00
 OE1 e:GLU27 2.0 37.8 1.0
O e:HOH409 2.0 45.9 1.0
OE1 e:GLU62 2.2 47.9 1.0
ND1 e:HIS65 2.5 41.4 1.0
CD e:GLU62 2.9 42.1 1.0
CD e:GLU27 3.0 37.5 1.0
OE2 e:GLU62 3.0 60.9 1.0
OE2 e:GLU27 3.3 37.7 1.0
CE1 e:HIS65 3.4 49.2 1.0
CG e:HIS65 3.5 33.7 1.0
CB e:HIS65 3.7 26.7 1.0
OE1 e:GLN141 3.8 41.7 1.0
O e:HOH430 3.9 46.5 1.0
O e:HOH410 4.1 57.0 1.0
CG e:GLU62 4.3 29.4 1.0
CG1 e:VAL110 4.3 28.9 1.0
CG e:GLU27 4.3 30.7 1.0
CA e:GLU62 4.6 22.3 1.0
NE2 e:HIS65 4.6 46.7 1.0
CD2 e:HIS65 4.6 39.0 1.0
CD e:GLN141 4.7 33.0 1.0
CB e:GLU62 4.7 24.5 1.0
CB e:GLU27 4.8 24.4 1.0

Reference:

K.M.Yip, N.Fischer, A.Chari, H.Stark. 1.33 A Structure of Human Apoferritin Obtained From Titan Mono- Bcor Microscope To Be Published.
Page generated: Tue Oct 8 15:49:43 2024

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