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Sodium in PDB 7a36: Crystal Structure of the C-Src SH3 Domain Mutant V111L-N113S-T114S in 7 M Urea

Enzymatic activity of Crystal Structure of the C-Src SH3 Domain Mutant V111L-N113S-T114S in 7 M Urea

All present enzymatic activity of Crystal Structure of the C-Src SH3 Domain Mutant V111L-N113S-T114S in 7 M Urea:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of the C-Src SH3 Domain Mutant V111L-N113S-T114S in 7 M Urea, PDB code: 7a36 was solved by A.Camara-Artigas, M.Plaza-Garrido, M.C.Salinas-Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.27 / 1.50
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 28.49, 40.532, 43.613, 90, 104.66, 90
R / Rfree (%) 15.4 / 17.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the C-Src SH3 Domain Mutant V111L-N113S-T114S in 7 M Urea (pdb code 7a36). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the C-Src SH3 Domain Mutant V111L-N113S-T114S in 7 M Urea, PDB code: 7a36:

Sodium binding site 1 out of 1 in 7a36

Go back to Sodium Binding Sites List in 7a36
Sodium binding site 1 out of 1 in the Crystal Structure of the C-Src SH3 Domain Mutant V111L-N113S-T114S in 7 M Urea


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the C-Src SH3 Domain Mutant V111L-N113S-T114S in 7 M Urea within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na206

b:29.9
occ:1.00
H B:SER114 2.1 19.7 1.0
OG B:SER114 2.3 23.3 1.0
O B:ASN112 2.8 14.8 1.0
O B:HOH331 2.8 8.1 1.0
N B:SER114 2.9 16.4 1.0
O B:HOH308 2.9 26.9 1.0
O B:HOH352 3.2 20.2 1.0
HB3 B:ASN112 3.2 15.5 1.0
HD1 B:TRP119 3.3 9.3 1.0
C B:ASN112 3.3 13.1 1.0
CB B:SER114 3.4 20.8 1.0
CA B:SER114 3.6 17.7 1.0
HA B:SER113 3.7 16.8 1.0
CD1 B:TRP119 3.7 7.8 1.0
HB2 B:ASN112 3.8 15.5 1.0
N B:SER113 3.8 14.3 1.0
CB B:ASN112 3.9 12.9 1.0
C B:SER113 3.9 15.3 1.0
HB3 B:SER114 3.9 24.9 1.0
CA B:SER113 4.0 14.0 1.0
C B:SER114 4.0 17.2 1.0
O B:SER114 4.0 16.2 1.0
HA B:TRP119 4.1 10.4 1.0
HE1 B:TRP119 4.1 11.1 1.0
HB2 B:SER114 4.1 24.9 1.0
CA B:ASN112 4.2 12.3 1.0
NE1 B:TRP119 4.2 9.2 1.0
O A:HOH350 4.2 24.4 1.0
H B:SER113 4.5 17.2 1.0
HA B:SER114 4.5 21.2 1.0
HA B:ASN112 4.6 14.7 1.0
CG B:TRP119 4.6 8.4 1.0
O B:TRP118 4.7 9.6 1.0
H B:LEU120 4.7 8.3 1.0
O B:GLU115 4.7 16.2 1.0
O B:HOH326 4.9 25.3 1.0
CA B:TRP119 4.9 8.6 1.0
N B:GLU115 5.0 16.2 1.0

Reference:

A.Camara-Artigas, M.Plaza-Garrido, M.C.Salinas-Garcia. Crystal Structure of the C-Src SH3 Domain Mutant V111L-N113S-T114S in 7 M Urea To Be Published.
Page generated: Tue Oct 8 15:48:58 2024

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