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Sodium in PDB 7a33: Crystal Structure of the C-Src SH3 Domain Mutant S94A-T98D-V111L- N113S-T114S at pH 3.0

Enzymatic activity of Crystal Structure of the C-Src SH3 Domain Mutant S94A-T98D-V111L- N113S-T114S at pH 3.0

All present enzymatic activity of Crystal Structure of the C-Src SH3 Domain Mutant S94A-T98D-V111L- N113S-T114S at pH 3.0:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of the C-Src SH3 Domain Mutant S94A-T98D-V111L- N113S-T114S at pH 3.0, PDB code: 7a33 was solved by A.Camara-Artigas, M.Plaza-Garrido, M.C.Salinas-Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.22 / 0.96
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 23.203, 63.262, 30.073, 90, 95.65, 90
R / Rfree (%) 11.9 / 13.4

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the C-Src SH3 Domain Mutant S94A-T98D-V111L- N113S-T114S at pH 3.0 (pdb code 7a33). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the C-Src SH3 Domain Mutant S94A-T98D-V111L- N113S-T114S at pH 3.0, PDB code: 7a33:

Sodium binding site 1 out of 1 in 7a33

Go back to Sodium Binding Sites List in 7a33
Sodium binding site 1 out of 1 in the Crystal Structure of the C-Src SH3 Domain Mutant S94A-T98D-V111L- N113S-T114S at pH 3.0


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the C-Src SH3 Domain Mutant S94A-T98D-V111L- N113S-T114S at pH 3.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na202

b:6.4
occ:1.00
O B:HOH364 2.3 7.7 1.0
O B:SER113 2.3 6.4 1.0
O B:GLY116 2.4 6.6 1.0
O B:HOH355 2.4 6.7 1.0
O B:HOH362 2.4 10.5 1.0
HA2 B:GLY116 3.0 7.8 1.0
C B:GLY116 3.1 5.7 1.0
HE1 B:TRP119 3.2 6.9 1.0
H B:GLY116 3.3 8.0 1.0
CA B:GLY116 3.3 6.5 1.0
N B:GLY116 3.4 6.6 1.0
HB2 B:SER113 3.5 6.5 1.0
C B:SER113 3.5 5.6 1.0
HA B:SER114 3.9 7.2 0.5
NE1 B:TRP119 3.9 5.8 1.0
HA B:SER114 4.0 11.6 0.6
C B:SER114 4.2 6.1 0.5
HA3 B:GLY116 4.3 7.8 1.0
CB B:SER113 4.3 5.4 1.0
HD1 B:TRP119 4.3 6.0 1.0
CA B:SER114 4.4 6.0 0.5
C B:GLU115 4.4 6.3 1.0
C B:SER114 4.4 9.4 0.6
N B:ASP117 4.4 5.0 1.0
O B:SER114 4.4 6.3 0.5
N B:SER114 4.4 5.6 0.5
N B:SER114 4.4 7.5 0.6
HG B:SER113 4.4 6.3 1.0
CA B:SER113 4.4 5.3 1.0
CA B:SER114 4.5 9.7 0.6
CD1 B:TRP119 4.5 5.0 1.0
N B:GLU115 4.5 6.2 1.0
HA B:ASP117 4.6 6.4 1.0
HA B:SER113 4.6 6.4 1.0
H B:GLU115 4.6 7.4 0.6
O B:SER114 4.7 12.5 0.6
H B:GLU115 4.7 7.4 0.5
OG B:SER113 4.8 5.2 1.0
CE2 B:TRP119 5.0 5.2 1.0

Reference:

A.Camara-Artigas, M.Plaza-Garrido, M.C.Salinas-Garcia. Crystal Structure of the C-Src SH3 Domain Mutant S94A-T98D-V111L-N113S-T114S at pH 3.0 To Be Published.
Page generated: Tue Oct 8 15:48:58 2024

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