Sodium in PDB 7a2l: Crystal Structure of the Fyn SH3 Domain Mutant E129Q in Space Group C21 at pH 4.0

Enzymatic activity of Crystal Structure of the Fyn SH3 Domain Mutant E129Q in Space Group C21 at pH 4.0

All present enzymatic activity of Crystal Structure of the Fyn SH3 Domain Mutant E129Q in Space Group C21 at pH 4.0:
2.7.10.2;

Protein crystallography data

The structure of Crystal Structure of the Fyn SH3 Domain Mutant E129Q in Space Group C21 at pH 4.0, PDB code: 7a2l was solved by A.Camara-Artigas, M.Plaza-Garrido, M.C.Salinas-Garcia, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.48 / 1.90
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 73.584, 45.896, 42.938, 90, 97.12, 90
R / Rfree (%) 20.7 / 26.1

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Fyn SH3 Domain Mutant E129Q in Space Group C21 at pH 4.0 (pdb code 7a2l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Fyn SH3 Domain Mutant E129Q in Space Group C21 at pH 4.0, PDB code: 7a2l:

Sodium binding site 1 out of 1 in 7a2l

Go back to Sodium Binding Sites List in 7a2l
Sodium binding site 1 out of 1 in the Crystal Structure of the Fyn SH3 Domain Mutant E129Q in Space Group C21 at pH 4.0


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Fyn SH3 Domain Mutant E129Q in Space Group C21 at pH 4.0 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na202

b:47.2
occ:1.00
O A:VAL138 2.2 30.0 1.0
O B:HOH210 2.4 47.1 1.0
O A:HOH315 2.5 38.3 1.0
O B:HOH221 2.5 36.5 1.0
O A:SER135 2.7 41.5 1.0
HA A:ASN136 3.2 52.6 1.0
HE2 B:LYS108 3.3 80.2 1.0
C A:VAL138 3.4 28.4 1.0
HA A:ALA139 3.5 47.1 1.0
H A:VAL138 3.6 38.2 1.0
HZ3 B:LYS108 3.6 91.3 1.0
HZ1 B:LYS108 3.7 91.3 1.0
C A:SER135 3.8 35.5 1.0
NZ B:LYS108 4.0 75.9 1.0
CA A:ASN136 4.0 43.7 1.0
CE B:LYS108 4.0 66.7 1.0
HG23 A:VAL138 4.0 45.5 1.0
N A:VAL138 4.2 31.7 1.0
CA A:ALA139 4.2 39.1 1.0
N A:ALA139 4.3 38.8 1.0
HG22 A:VAL138 4.3 45.5 1.0
HB2 A:ALA139 4.3 56.6 1.0
C A:ASN136 4.3 32.5 1.0
N A:ASN136 4.4 38.5 1.0
O B:HOH227 4.4 36.7 1.0
HD11 A:LEU90 4.4 76.3 1.0
CA A:VAL138 4.4 31.7 1.0
HE2 A:PHE87 4.5 57.6 1.0
O B:HOH213 4.5 38.0 1.0
HG3 B:LYS108 4.5 44.4 1.0
HB2 A:SER135 4.6 54.3 1.0
CG2 A:VAL138 4.6 37.8 1.0
HE3 B:LYS108 4.6 80.2 1.0
O A:ASN136 4.6 39.2 1.0
HD3 A:PRO140 4.6 50.5 1.0
O B:HOH209 4.8 34.4 1.0
CB A:ALA139 4.8 47.1 1.0
N A:TYR137 4.8 33.4 1.0
HZ2 B:LYS108 4.8 91.3 1.0
HD12 A:LEU90 4.9 76.3 1.0
O B:GLY106 4.9 38.2 1.0
HD2 A:PHE87 4.9 66.7 1.0
CA A:SER135 5.0 37.4 1.0
HD3 B:LYS108 5.0 52.2 1.0

Reference:

A.Camara-Artigas, M.Plaza-Garrido, M.C.Salinas-Garcia. Crystal Structure of the Fyn SH3 Domain Mutant E129Q in Space Group C21 at pH 4.0 To Be Published.
Page generated: Fri Sep 24 16:25:01 2021

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