Sodium in PDB 6zpq: Crystal Structure of the Open Conformation of Angiotensin-1 Converting Enzyme N-Domain.

Enzymatic activity of Crystal Structure of the Open Conformation of Angiotensin-1 Converting Enzyme N-Domain.

All present enzymatic activity of Crystal Structure of the Open Conformation of Angiotensin-1 Converting Enzyme N-Domain.:
3.4.15.1;

Protein crystallography data

The structure of Crystal Structure of the Open Conformation of Angiotensin-1 Converting Enzyme N-Domain., PDB code: 6zpq was solved by G.E.Cozier, K.R.Acharya, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 80.50 / 1.85
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 74.683, 99.934, 128.701, 97.76, 90.21, 111.06
R / Rfree (%) 18.4 / 21.4

Other elements in 6zpq:

The structure of Crystal Structure of the Open Conformation of Angiotensin-1 Converting Enzyme N-Domain. also contains other interesting chemical elements:

Magnesium (Mg) 3 atoms
Zinc (Zn) 4 atoms
Calcium (Ca) 4 atoms
Chlorine (Cl) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Open Conformation of Angiotensin-1 Converting Enzyme N-Domain. (pdb code 6zpq). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Open Conformation of Angiotensin-1 Converting Enzyme N-Domain., PDB code: 6zpq:

Sodium binding site 1 out of 1 in 6zpq

Go back to Sodium Binding Sites List in 6zpq
Sodium binding site 1 out of 1 in the Crystal Structure of the Open Conformation of Angiotensin-1 Converting Enzyme N-Domain.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Open Conformation of Angiotensin-1 Converting Enzyme N-Domain. within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na719

b:63.2
occ:1.00
 O B:HOH1165 2.4 59.6 1.0
OD1 B:ASP177 2.5 41.1 1.0
O B:HOH1116 2.7 61.2 1.0
O B:HOH1019 2.7 45.4 1.0
OD2 B:ASP177 2.9 47.7 1.0
CG B:ASP177 3.0 47.1 1.0
O B:HOH1080 4.4 45.7 1.0
O B:HOH803 4.5 49.3 1.0
CB B:ASP177 4.6 35.7 1.0
O B:PRO173 4.7 31.0 1.0
HG2 B:GLU176 4.9 40.6 0.6
HA B:ASP177 4.9 37.8 1.0
HB3 B:ASP177 5.0 42.8 1.0

Reference:

G.E.Cozier, L.Lubbe, E.D.Sturrock, K.R.Acharya. Angiotensin-Converting Enzyme Open For Business: Structural Insights Into the Sub-Domain Dynamics. Febs J. 2020.
ISSN: ISSN 1742-464X
PubMed: 33067882
DOI: 10.1111/FEBS.15601
Page generated: Tue Dec 15 17:11:23 2020

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