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Sodium in PDB 6zmx: Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution

Protein crystallography data

The structure of Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution, PDB code: 6zmx was solved by R.Pandian, N.Shobana, S.S.Sundaresan, Y.Sayed, M.N.Ponnuswamy, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 60.84 / 1.39
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 79.760, 82.140, 90.540, 90.00, 90.00, 90.00
R / Rfree (%) 19.7 / 22.3

Other elements in 6zmx:

The structure of Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution also contains other interesting chemical elements:

Iron (Fe) 4 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution (pdb code 6zmx). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution, PDB code: 6zmx:

Sodium binding site 1 out of 1 in 6zmx

Go back to Sodium Binding Sites List in 6zmx
Sodium binding site 1 out of 1 in the Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Na202

b:37.4
occ:1.00
NH2 D:ARG143 2.6 30.0 1.0
O D:LYS82 2.8 30.2 1.0
O D:ALA140 2.9 24.5 1.0
CZ D:ARG143 2.9 30.0 1.0
NE D:ARG143 3.1 30.0 1.0
CA D:SER86 3.4 31.8 1.0
N D:SER86 3.6 33.3 1.0
CB D:ARG143 3.6 30.0 1.0
C D:PHE85 3.6 26.2 1.0
O D:PHE85 3.7 26.0 1.0
C D:LYS82 3.8 32.8 1.0
C D:ALA140 3.8 24.2 1.0
NH1 D:ARG143 3.9 30.0 1.0
CB D:SER89 4.0 24.5 1.0
CG D:ARG143 4.1 30.0 1.0
CB D:SER86 4.1 36.1 1.0
CA D:ALA140 4.1 20.2 1.0
CA D:LYS82 4.1 27.9 1.0
CD D:ARG143 4.2 30.0 1.0
CB D:ALA140 4.2 25.1 1.0
CB D:PHE85 4.4 25.2 1.0
CA D:PHE85 4.4 26.5 1.0
OG D:SER89 4.5 24.4 1.0
CB D:LYS82 4.6 39.9 1.0
OG D:SER86 4.6 50.9 1.0
C D:SER86 4.6 21.9 1.0
N D:PHE85 4.8 27.0 1.0
O D:SER86 4.8 26.3 1.0
N D:LEU141 4.9 22.9 1.0
CA D:ARG143 4.9 25.4 1.0
N D:ASN83 4.9 34.9 1.0

Reference:

R.Pandian, N.Shobana, S.S.Sundaresan, Y.Sayed, M.N.Ponnuswamy. Crystal Structure of Hemoglobin From Turkey (Meleagiris Gallopova) Crystallized in Orthorhombic Form at 1.4 Angstrom Resolution To Be Published.
Page generated: Tue Dec 15 17:10:38 2020

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