Sodium in PDB 6zmu: Crystal Structure of the Germline-Specific Thioredoxin Protein Deadhead (Thioredoxin-1) From Drospohila Melanogaster, P43212

The structure of Crystal Structure of the Germline-Specific Thioredoxin Protein Deadhead (Thioredoxin-1) From Drospohila Melanogaster, P43212, PDB code: 6zmu was solved by B.Baginski, R.Pluta, M.J.Macias, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	77.43 / 1.95
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	111.827, 111.827, 106.991, 90.00, 90.00, 90.00
R / Rfree (%)	18.5 / 22

The binding sites of Sodium atom in the Crystal Structure of the Germline-Specific Thioredoxin Protein Deadhead (Thioredoxin-1) From Drospohila Melanogaster, P43212 (pdb code 6zmu). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Germline-Specific Thioredoxin Protein Deadhead (Thioredoxin-1) From Drospohila Melanogaster, P43212, PDB code: 6zmu:

Sodium binding site 1 out of 1 in the Crystal Structure of the Germline-Specific Thioredoxin Protein Deadhead (Thioredoxin-1) From Drospohila Melanogaster, P43212


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Germline-Specific Thioredoxin Protein Deadhead (Thioredoxin-1) From Drospohila Melanogaster, P43212 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na205 b:39.4 occ:1.00 OE2 C:GLU63 2.2 42.1 1.0 O C:ASP60 2.2 36.4 1.0 O B:ASP60 2.3 37.2 1.0 OE2 B:GLU63 2.3 38.2 1.0 CD C:GLU63 3.1 41.9 1.0 CD B:GLU63 3.2 39.7 1.0 OE1 C:GLU63 3.4 42.7 1.0 C C:ASP60 3.4 37.1 1.0 C B:ASP60 3.4 37.1 1.0 OE1 B:GLU63 3.5 37.9 1.0 CA B:LYS61 3.9 34.3 1.0 CA C:LYS61 4.1 41.9 1.0 N B:LYS61 4.1 32.7 1.0 N C:LYS61 4.2 38.4 1.0 CD B:LYS61 4.3 36.4 1.0 CG C:GLU63 4.4 43.4 1.0 CG B:GLU63 4.4 41.2 1.0 CD C:LYS61 4.5 35.3 1.0 CA C:ASP60 4.5 38.2 1.0 CA B:ASP60 4.6 37.2 1.0 CB D:ASP60 4.7 36.5 1.0 C B:LYS61 4.7 37.6 1.0 C C:LYS61 4.8 41.4 1.0 CE B:LYS61 4.8 38.2 1.0 O D:ASP60 4.8 38.1 1.0 CE C:LYS61 4.9 34.5 1.0 CB C:ASP60 4.9 36.6 1.0 CB B:ASP60 5.0 35.8 1.0

R.Freier, E.Aragon, B.Baginski, R.Pluta, P.Martin-Malpartida, L.Ruiz, M.Condeminas, C.Gonzaez, M.Macias. Structures of the Germline-Specific Deadhead and Thioredoxin T Proteins From Drosophila Melanogaster Reveal Unique Features Among Thioredoxins Biorxiv 2020.
DOI: 10.1101/2020.07.29.226944