Sodium in PDB 6z5x: The Rsl - Sulfonato-Calix[8]Arene Complex, P213 Form, Acetate pH 4.8

The structure of The Rsl - Sulfonato-Calix[8]Arene Complex, P213 Form, Acetate pH 4.8, PDB code: 6z5x was solved by S.Engilberge, K.Ramberg, P.B.Crowley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.29 / 1.14
Space group	P 21 3
Cell size a, b, c (Å), α, β, γ (°)	64.056, 64.056, 64.056, 90, 90, 90
R / Rfree (%)	16.7 / 19.1

The binding sites of Sodium atom in the The Rsl - Sulfonato-Calix[8]Arene Complex, P213 Form, Acetate pH 4.8 (pdb code 6z5x). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Rsl - Sulfonato-Calix[8]Arene Complex, P213 Form, Acetate pH 4.8, PDB code: 6z5x:

Sodium binding site 1 out of 1 in the The Rsl - Sulfonato-Calix[8]Arene Complex, P213 Form, Acetate pH 4.8


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Rsl - Sulfonato-Calix[8]Arene Complex, P213 Form, Acetate pH 4.8 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na105 b:16.1 occ:1.00 OD1 A:ASN47 2.6 14.1 1.0 OG A:SER66 2.7 13.7 1.0 O A:TYR64 2.8 9.2 1.0 O A:ASN47 3.3 10.5 1.0 CB A:SER66 3.3 12.4 1.0 N A:SER66 3.5 10.7 1.0 C A:TYR64 3.6 8.8 1.0 CG A:ASN47 3.6 12.6 1.0 C A:ASN47 3.6 9.6 1.0 N A:VAL48 3.9 9.8 1.0 C A:ALA65 4.0 10.5 1.0 CA A:VAL48 4.0 9.9 1.0 CB A:ASN47 4.0 12.8 1.0 CA A:SER66 4.0 12.4 1.0 N A:ALA65 4.1 9.5 1.0 CA A:ALA65 4.1 10.2 1.0 N A:SER49 4.1 8.5 1.0 C A:VAL48 4.2 8.9 1.0 CB A:TYR64 4.4 8.8 1.0 CA A:ASN47 4.4 10.8 1.0 CA A:TYR64 4.6 8.9 1.0 CG2 A:THR71 4.6 12.1 1.0 OG A:SER49 4.7 9.5 1.0 O A:ALA65 4.8 12.1 1.0 ND2 A:ASN47 4.8 16.0 1.0 OG1 A:THR71 4.9 14.3 1.0 O A:VAL48 5.0 10.1 1.0

K.O.Ramberg, S.Engilberge, T.Skorek, P.B.Crowley. Facile Fabrication of Protein-Macrocycle Frameworks. J.Am.Chem.Soc. V. 143 1896 2021.
ISSN: ESSN 1520-5126
PubMed: 33470808
DOI: 10.1021/JACS.0C10697