Sodium in PDB 6z5a: Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941

Enzymatic activity of Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941

All present enzymatic activity of Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941, PDB code: 6z5a was solved by A.Chaikuad, P.Benderitter, J.Hoflack, A.Denis, S.Knapp, Structuralgenomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.97 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 77.840, 78.290, 83.190, 90.00, 90.00, 90.00
R / Rfree (%) 15.6 / 18.2

Other elements in 6z5a:

The structure of Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941 also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941 (pdb code 6z5a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941, PDB code: 6z5a:

Sodium binding site 1 out of 1 in 6z5a

Go back to Sodium Binding Sites List in 6z5a
Sodium binding site 1 out of 1 in the Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na806

b:19.9
occ:1.00
O A:HOH1230 2.2 29.1 1.0
O A:GLU554 2.4 7.7 1.0
O A:PHE556 2.5 9.7 1.0
O A:HOH934 2.5 24.4 1.0
O A:HOH1157 2.5 20.6 1.0
O A:HOH933 2.6 18.6 1.0
C A:GLU554 3.4 8.0 1.0
C A:PHE556 3.6 7.7 1.0
N A:GLY558 3.8 7.5 1.0
CA A:GLU554 4.1 8.5 1.0
N A:PHE556 4.2 6.3 1.0
OE2 A:GLU606 4.2 17.2 0.5
C A:ILE557 4.2 7.3 1.0
CB A:GLU554 4.2 10.3 1.0
CA A:ILE557 4.2 7.9 1.0
OE2 A:GLU606 4.3 18.8 0.5
N A:ILE557 4.4 7.8 1.0
O A:HOH1077 4.4 28.3 1.0
N A:GLY555 4.4 7.0 1.0
NE2 A:GLN682 4.4 13.4 0.7
CA A:GLY558 4.4 7.4 1.0
O A:HOH1092 4.4 30.1 1.0
OG A:SER684 4.5 9.0 1.0
CA A:PHE556 4.5 6.8 1.0
C A:GLY555 4.6 6.8 1.0
O A:HOH1054 4.6 10.6 1.0
CA A:GLY555 4.7 7.3 1.0
O A:HOH1010 4.8 14.3 1.0
O A:HOH1311 4.9 41.7 1.0

Reference:

A.Chaikuad, P.Benderitter, J.Hoflack, A.Denis, S.Knapp, Structural Genomics Consortium (Sgc). Crystal Structure of Haspin (GSG2) in Complex with Macrocycle ODS2002941 To Be Published.
Page generated: Tue Dec 15 16:50:15 2020

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