Sodium in PDB 6yzh: Crystal Structure of P8C9 Bound to CK2ALPHA

Enzymatic activity of Crystal Structure of P8C9 Bound to CK2ALPHA

All present enzymatic activity of Crystal Structure of P8C9 Bound to CK2ALPHA:
2.7.11.1;

Protein crystallography data

The structure of Crystal Structure of P8C9 Bound to CK2ALPHA, PDB code: 6yzh was solved by E.Atkinson, J.Iegre, P.Brear, D.Baker, H.Sore, M.Hyvonen, D.Spring, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.19 / 1.19
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 56.374, 65.019, 59.198, 90, 111.2, 90
R / Rfree (%) 17.2 / 19

Other elements in 6yzh:

The structure of Crystal Structure of P8C9 Bound to CK2ALPHA also contains other interesting chemical elements:

Magnesium (Mg) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of P8C9 Bound to CK2ALPHA (pdb code 6yzh). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of P8C9 Bound to CK2ALPHA, PDB code: 6yzh:

Sodium binding site 1 out of 1 in 6yzh

Go back to Sodium Binding Sites List in 6yzh
Sodium binding site 1 out of 1 in the Crystal Structure of P8C9 Bound to CK2ALPHA


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of P8C9 Bound to CK2ALPHA within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na405

b:33.3
occ:1.00
OG1 A:THR326 2.3 34.5 1.0
N A:THR326 2.9 20.6 1.0
O A:TYR323 2.9 16.2 1.0
N A:VAL327 3.1 18.6 1.0
C A:PHE324 3.2 14.4 1.0
CB A:THR326 3.3 26.2 1.0
CA A:THR326 3.4 24.1 1.0
CA A:PHE324 3.5 14.2 1.0
N A:TYR325 3.5 18.2 1.0
O A:PHE324 3.6 16.5 1.0
CD A:ARG134 3.7 17.1 1.0
C A:THR326 3.7 23.5 1.0
CG2 A:VAL327 3.7 19.4 1.0
C A:TYR323 3.8 15.2 1.0
C A:TYR325 3.9 22.1 1.0
NH1 A:ARG134 4.0 17.4 1.0
CG2 A:THR326 4.0 25.9 1.0
N A:PHE324 4.0 13.7 1.0
CB A:VAL327 4.2 18.6 1.0
CA A:VAL327 4.2 19.2 1.0
CA A:TYR325 4.3 20.8 1.0
CB A:ARG134 4.5 12.9 1.0
NE A:ARG134 4.6 16.5 1.0
CG A:ARG134 4.7 15.1 1.0
CZ A:ARG134 4.7 17.4 1.0
CB A:PHE324 4.8 13.1 1.0
O A:THR326 4.9 25.4 1.0
O A:PRO322 4.9 17.8 1.0
O A:TYR325 4.9 25.1 1.0
CE1 A:TYR131 4.9 20.0 1.0

Reference:

E.Atkinson, J.Iegre, P.Brear, D.Baker, H.Sore, M.Hyvonen, D.Spring. Crystal Structure of P8C9 Bound to CK2ALPHA To Be Published.
Page generated: Mon Jul 12 15:52:19 2021

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy