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Sodium in PDB 6xat: Crystal Structure of the Human FOXP4 Dna Binding Domain

Protein crystallography data

The structure of Crystal Structure of the Human FOXP4 Dna Binding Domain, PDB code: 6xat was solved by P.Villalobos, V.Castro-Fernandez, E.Medina, F.Gonzalez-Ordenes, P.Maturana, A.Herrera-Morande, C.A.Ramirez-Sarmiento, J.Babul, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.10 / 2.20
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 40.449, 70.648, 63.469, 90, 90, 90
R / Rfree (%) 19.8 / 22.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Human FOXP4 Dna Binding Domain (pdb code 6xat). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Human FOXP4 Dna Binding Domain, PDB code: 6xat:

Sodium binding site 1 out of 1 in 6xat

Go back to Sodium Binding Sites List in 6xat
Sodium binding site 1 out of 1 in the Crystal Structure of the Human FOXP4 Dna Binding Domain


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Human FOXP4 Dna Binding Domain within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na101

b:46.7
occ:1.00
O A:HIS58 2.3 42.8 1.0
O A:HOH216 2.4 44.4 1.0
O A:PHE61 2.4 39.9 1.0
O A:LEU55 2.5 45.3 1.0
O A:SER56 3.0 51.4 1.0
C A:HIS58 3.4 48.6 1.0
C A:PHE61 3.6 40.4 1.0
C A:SER56 3.6 46.7 1.0
C A:LEU55 3.7 45.7 1.0
CB A:PHE61 4.0 37.5 1.0
CA A:SER56 4.0 42.3 1.0
CZ3 A:TRP72 4.1 38.1 1.0
N A:HIS58 4.1 45.6 1.0
CA A:PHE61 4.1 37.1 1.0
N A:PHE61 4.2 38.1 1.0
N A:LYS59 4.2 44.9 1.0
CA A:LYS59 4.3 47.8 1.0
N A:SER56 4.3 41.7 1.0
CA A:HIS58 4.3 47.7 1.0
N A:LEU57 4.4 41.2 1.0
C A:LEU57 4.4 49.5 1.0
O A:HOH207 4.5 43.0 1.0
C A:LYS59 4.5 44.5 1.0
O A:HOH215 4.6 59.1 1.0
CH2 A:TRP72 4.7 39.6 1.0
N A:VAL62 4.7 38.5 1.0
O A:LEU57 4.7 55.0 1.0
O A:LYS59 4.7 50.7 1.0
CA A:LEU55 4.8 42.6 1.0
CA A:LEU57 4.9 42.8 1.0
O A:ASN54 5.0 36.1 1.0

Reference:

P.Villalobos, V.Castro-Fernandez, E.Medina, F.Gonzalez-Ordenes, P.Maturana, A.Herrera-Morande, C.A.Ramirez-Sarmiento, J.Babul. Crystal Structure of the Human FOXP4 Dna Binding Domain To Be Published.
Page generated: Tue Oct 8 14:49:51 2024

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