Sodium in PDB 6x4i: Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2 in the Complex with 3'-Uridinemonophosphate

The structure of Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2 in the Complex with 3'-Uridinemonophosphate, PDB code: 6x4i was solved by C.Chang, Y.Kim, N.Maltseva, R.Jedrzejczak, M.Endres, K.Michalska, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.19 / 1.85
Space group	P 63
Cell size a, b, c (Å), α, β, γ (°)	150.940, 150.940, 111.858, 90.00, 90.00, 120.00
R / Rfree (%)	16.6 / 18.9

The binding sites of Sodium atom in the Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2 in the Complex with 3'-Uridinemonophosphate (pdb code 6x4i). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2 in the Complex with 3'-Uridinemonophosphate, PDB code: 6x4i:

Sodium binding site 1 out of 1 in the Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2 in the Complex with 3'-Uridinemonophosphate


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2 in the Complex with 3'-Uridinemonophosphate within 5.0Å range: probe atom residue distance (Å) B Occ B:Na402 b:31.4 occ:1.00 O B:HOH837 2.4 42.9 1.0 O B:HOH777 2.4 44.1 1.0 O B:HOH634 2.5 23.9 1.0 O B:HOH552 2.5 26.1 1.0 OD2 B:ASP79 2.5 19.1 1.0 O B:HOH599 2.6 43.6 1.0 CG B:ASP79 3.3 21.9 1.0 OD1 B:ASP79 3.5 21.4 1.0 OG1 B:THR121 3.9 17.4 1.0 O B:PRO119 4.3 28.7 1.0 O B:GLY77 4.3 17.5 1.0 N B:THR121 4.3 17.4 1.0 CB B:THR121 4.5 19.4 1.0 O B:HOH772 4.7 44.1 1.0 CB B:ASP79 4.8 16.1 1.0 O B:HOH828 4.9 52.5 1.0 CA B:LEU120 4.9 20.9 1.0

Y.Kim, N.Maltseva, R.Jedrzejczak, M.Endres, C.Chang, K.Michalska, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of NSP15 Endoribonuclease From Sars Cov-2 in the Complex with 3'-Uridinemonophosphate To Be Published.