Sodium in PDB 6wy4: Crystal Structure of Wild Type Class D Beta-Lactamase From Clostridium Difficile 630

All present enzymatic activity of Crystal Structure of Wild Type Class D Beta-Lactamase From Clostridium Difficile 630:
3.5.2.6;

The structure of Crystal Structure of Wild Type Class D Beta-Lactamase From Clostridium Difficile 630, PDB code: 6wy4 was solved by G.Minasov, L.Shuvalova, I.Dubrovska, M.Rosas-Lemus, R.Jedrzejczak, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.66 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	85.332, 93.261, 138.053, 90.00, 90.00, 90.00
R / Rfree (%)	17.6 / 20.9

The binding sites of Sodium atom in the Crystal Structure of Wild Type Class D Beta-Lactamase From Clostridium Difficile 630 (pdb code 6wy4). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Wild Type Class D Beta-Lactamase From Clostridium Difficile 630, PDB code: 6wy4:

Sodium binding site 1 out of 1 in the Crystal Structure of Wild Type Class D Beta-Lactamase From Clostridium Difficile 630


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Wild Type Class D Beta-Lactamase From Clostridium Difficile 630 within 5.0Å range: probe atom residue distance (Å) B Occ D:Na301 b:40.0 occ:1.00 O D:HOH431 2.3 23.7 0.4 O D:HOH538 2.4 44.1 1.0 O D:HOH484 2.4 28.6 1.0 O D:HOH530 2.5 23.5 0.5 O D:THR201 2.7 33.6 1.0 O D:GLY199 2.7 36.5 1.0 C D:GLY199 3.6 35.5 1.0 O D:HOH431 3.7 19.5 0.6 C D:THR201 3.9 33.6 1.0 CA D:GLY199 4.2 33.9 1.0 O D:PHE203 4.2 28.5 1.0 O D:HOH567 4.2 42.9 1.0 O D:HOH410 4.2 29.0 1.0 N D:THR201 4.3 35.9 1.0 N D:ASP200 4.5 35.5 1.0 C D:ASP200 4.7 38.6 1.0 CA D:ASN202 4.8 34.1 1.0 N D:ASN202 4.8 33.6 1.0 CA D:THR201 4.8 33.6 1.0 CA D:ASP200 4.8 38.8 1.0 O B:HOH428 4.9 31.6 1.0

G.Minasov, L.Shuvalova, I.Dubrovska, M.Rosas-Lemus, R.Jedrzejczak, K.J.F.Satchell, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Wild Type Class D Beta-Lactamase From Clostridium Difficile 630 To Be Published.