Sodium in PDB 6wur: Crystal Structure of Prl-2 Phosphatase C101D Mutant in Complex with the Bateman Domain of CNNM3 Magnesium Transporter

Enzymatic activity of Crystal Structure of Prl-2 Phosphatase C101D Mutant in Complex with the Bateman Domain of CNNM3 Magnesium Transporter

All present enzymatic activity of Crystal Structure of Prl-2 Phosphatase C101D Mutant in Complex with the Bateman Domain of CNNM3 Magnesium Transporter:
3.1.3.48;

Protein crystallography data

The structure of Crystal Structure of Prl-2 Phosphatase C101D Mutant in Complex with the Bateman Domain of CNNM3 Magnesium Transporter, PDB code: 6wur was solved by G.Kozlov, K.Gehring, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 24.17 / 2.88
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 56.857, 124.544, 153.413, 90.00, 90.00, 90.00
R / Rfree (%) 23.8 / 29.5

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Prl-2 Phosphatase C101D Mutant in Complex with the Bateman Domain of CNNM3 Magnesium Transporter (pdb code 6wur). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Prl-2 Phosphatase C101D Mutant in Complex with the Bateman Domain of CNNM3 Magnesium Transporter, PDB code: 6wur:

Sodium binding site 1 out of 1 in 6wur

Go back to Sodium Binding Sites List in 6wur
Sodium binding site 1 out of 1 in the Crystal Structure of Prl-2 Phosphatase C101D Mutant in Complex with the Bateman Domain of CNNM3 Magnesium Transporter


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Prl-2 Phosphatase C101D Mutant in Complex with the Bateman Domain of CNNM3 Magnesium Transporter within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na501

b:91.4
occ:1.00
 O B:TYR386 2.4 0.1 1.0
OD2 B:ASP361 2.5 0.2 1.0
O B:THR383 2.7 96.5 1.0
OD1 B:ASP361 2.8 0.1 1.0
CG B:ASP361 2.9 0.9 1.0
CA B:ASN387 3.2 0.4 1.0
ND2 B:ASN387 3.2 0.6 1.0
C B:TYR386 3.4 0.1 1.0
N B:ASN387 3.7 0.0 1.0
N B:HIS388 3.8 94.8 1.0
C B:THR383 3.8 94.1 1.0
C B:ASN387 4.0 0.2 1.0
CB B:ASN387 4.0 0.5 1.0
CG B:ASN387 4.1 0.9 1.0
CG2 B:THR383 4.1 0.9 1.0
CB B:ASP361 4.2 77.6 1.0
CA B:THR383 4.4 89.0 1.0
CD2 B:HIS388 4.5 90.0 1.0
O B:HIS388 4.7 88.2 1.0
CA B:TYR386 4.8 0.3 1.0
CB B:THR383 4.9 0.7 1.0
O B:MET362 4.9 97.7 1.0
N B:ARG384 5.0 0.3 1.0
CA B:HIS388 5.0 75.7 1.0

Reference:

G.Kozlov, Y.Funato, S.Chen, Z.Zhang, K.Illes, H.Miki, K.Gehring. Crystal Structure of Prl Phosphatase C104D Mutant in Complex with the Bateman Domain of Cnnm Magnesium Transporter J.Biol.Chem. 2020.
ISSN: ESSN 1083-351X
Page generated: Tue Dec 15 15:49:14 2020

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