Sodium in PDB 6wue: Tetragonal Crystal Form of Sbtb From Synechocystis PCC6803

The structure of Tetragonal Crystal Form of Sbtb From Synechocystis PCC6803, PDB code: 6wue was solved by G.Bu, C.R.Simmons, D.R.Nielsen, B.L.Nannenga, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	33.75 / 1.80
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	51.571, 51.571, 178.412, 90.00, 90.00, 90.00
R / Rfree (%)	18.6 / 20.5

The binding sites of Sodium atom in the Tetragonal Crystal Form of Sbtb From Synechocystis PCC6803 (pdb code 6wue). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Tetragonal Crystal Form of Sbtb From Synechocystis PCC6803, PDB code: 6wue:

Sodium binding site 1 out of 1 in the Tetragonal Crystal Form of Sbtb From Synechocystis PCC6803


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Tetragonal Crystal Form of Sbtb From Synechocystis PCC6803 within 5.0Å range: probe atom residue distance (Å) B Occ B:Na203 b:71.2 occ:1.00 O B:HOH339 2.4 23.6 1.0 OD2 B:ASP86 2.5 38.0 1.0 O B:HOH337 2.7 26.6 1.0 N B:ASP86 2.9 22.7 1.0 CG B:ASP86 2.9 39.7 1.0 O B:TYR83 3.1 21.1 1.0 CB B:ASP86 3.1 31.4 1.0 C B:TYR83 3.2 17.4 1.0 O B:LYS82 3.2 19.0 1.0 O B:HOH370 3.3 47.4 1.0 CA B:TYR83 3.4 15.9 1.0 N B:ASN85 3.5 19.9 1.0 CA B:ASP86 3.6 26.9 1.0 CB B:ASN85 3.7 31.9 1.0 C B:ASN85 3.7 34.5 1.0 CA B:ASN85 3.8 22.8 1.0 OD1 B:ASP86 3.8 34.4 1.0 C B:LYS82 3.9 17.4 1.0 N B:PHE84 4.0 17.3 1.0 N B:TYR83 4.0 15.7 1.0 C B:PHE84 4.4 19.9 1.0 O B:HOH325 4.5 25.8 1.0 ND2 B:ASN85 4.5 51.2 1.0 CG B:ASN85 4.5 39.6 1.0 C B:ASP86 4.6 21.4 1.0 N B:TYR87 4.6 16.5 1.0 CD2 B:TYR87 4.6 18.0 1.0 CB B:TYR83 4.7 13.7 1.0 CA B:PHE84 4.7 18.4 1.0 O B:ASN85 4.8 36.2 1.0 CE2 B:TYR87 5.0 18.3 1.0

G.Bu, C.R.Simmons, D.R.Nielsen, B.L.Nannenga. Tetragonal Crystal Form of the Cyanobacterial Bicarbonate-Transporter Regulator Sbtb From Synechocystis Sp. Pcc 6803. Acta Crystallogr.,Sect.F V. 76 438 2020.
ISSN: ESSN 2053-230X
PubMed: 32880592
DOI: 10.1107/S2053230X20010523