Sodium in PDB 6wsa: Crystal Structure of A Betaine Aldehyde Dehydrogenase From Burkholderia Pseudomallei Without Cofactor

Enzymatic activity of Crystal Structure of A Betaine Aldehyde Dehydrogenase From Burkholderia Pseudomallei Without Cofactor

All present enzymatic activity of Crystal Structure of A Betaine Aldehyde Dehydrogenase From Burkholderia Pseudomallei Without Cofactor:
1.2.1.8;

Protein crystallography data

The structure of Crystal Structure of A Betaine Aldehyde Dehydrogenase From Burkholderia Pseudomallei Without Cofactor, PDB code: 6wsa was solved by Seattle Structural Genomics Center For Infectious Disease (Ssgcid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.51 / 2.05
Space group P 62 2 2
Cell size a, b, c (Å), α, β, γ (°) 107.860, 107.860, 233.530, 90.00, 90.00, 120.00
R / Rfree (%) 14 / 17.3

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of A Betaine Aldehyde Dehydrogenase From Burkholderia Pseudomallei Without Cofactor (pdb code 6wsa). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of A Betaine Aldehyde Dehydrogenase From Burkholderia Pseudomallei Without Cofactor, PDB code: 6wsa:

Sodium binding site 1 out of 1 in 6wsa

Go back to Sodium Binding Sites List in 6wsa
Sodium binding site 1 out of 1 in the Crystal Structure of A Betaine Aldehyde Dehydrogenase From Burkholderia Pseudomallei Without Cofactor


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of A Betaine Aldehyde Dehydrogenase From Burkholderia Pseudomallei Without Cofactor within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na515

b:32.1
occ:1.00
 OG1 A:THR26 2.5 31.8 1.0
O A:VAL180 2.6 30.0 1.0
O A:ASP93 2.6 27.5 1.0
O A:PHE27 2.6 34.3 1.0
O A:HOH726 2.6 39.6 1.0
O A:HOH874 2.7 31.8 1.0
OD1 A:ASP93 2.7 28.6 1.0
C A:ASP93 3.6 31.6 1.0
N A:PHE27 3.7 32.5 1.0
C A:PHE27 3.7 36.9 1.0
CG A:ASP93 3.8 30.6 1.0
C A:VAL180 3.8 30.2 1.0
CB A:THR26 3.9 25.4 1.0
CA A:ASP93 3.9 27.4 1.0
O A:HOH867 4.3 41.2 1.0
C A:THR26 4.3 30.7 1.0
CA A:PHE27 4.3 34.2 1.0
CA A:THR26 4.3 26.5 1.0
CB A:ASP93 4.4 23.7 1.0
CD1 A:LEU35 4.4 28.5 1.0
CG1 A:VAL180 4.5 30.0 1.0
CG2 A:THR181 4.5 25.4 1.0
CA A:THR181 4.6 32.3 1.0
CD A:PRO29 4.6 30.5 1.0
N A:THR181 4.6 27.4 1.0
OD2 A:ASP93 4.7 28.5 1.0
CA A:VAL180 4.7 29.7 1.0
N A:THR94 4.8 29.6 1.0
N A:ASP28 4.8 34.2 1.0
CG2 A:THR26 5.0 25.1 1.0
O A:ARG92 5.0 30.3 1.0

Reference:

T.E.Edwards, D.M.Dranow, J.Abendroth, P.S.Horanyi, D.D.Lorimer, Seattle Structural Genomics Center For Infectious Disease(Ssgcid). Crystal Structure of A Betaine Aldehyde Dehydrogenase From Burkholderia Pseudomallei Without Cofactor To Be Published.
Page generated: Tue Dec 15 15:47:09 2020

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