Sodium in PDB 6wqp: GH5-4 Broad Specificity Endoglucanase From Ruminococcus Champanellensis

The structure of GH5-4 Broad Specificity Endoglucanase From Ruminococcus Champanellensis, PDB code: 6wqp was solved by C.M.Bianchetti, C.A.Bingman, R.W.Smith, E.M.Glasgow, B.G.Fox, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.37 / 1.60
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	49.980, 85.850, 87.200, 90.00, 96.54, 90.00
R / Rfree (%)	20.3 / 24.2

The binding sites of Sodium atom in the GH5-4 Broad Specificity Endoglucanase From Ruminococcus Champanellensis (pdb code 6wqp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the GH5-4 Broad Specificity Endoglucanase From Ruminococcus Champanellensis, PDB code: 6wqp:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the GH5-4 Broad Specificity Endoglucanase From Ruminococcus Champanellensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of GH5-4 Broad Specificity Endoglucanase From Ruminococcus Champanellensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Na404 b:28.5 occ:1.00 O A:HOH594 2.3 19.0 1.0 O A:HOH771 2.3 25.1 1.0 O A:ILE81 2.5 18.0 1.0 O A:THR84 2.6 16.1 1.0 O A:HOH659 2.6 31.7 1.0 O A:HOH708 2.6 26.3 1.0 H A:THR84 3.3 16.6 1.0 HB A:THR84 3.6 20.8 1.0 C A:ILE81 3.7 15.9 1.0 HA A:ASP82 3.7 20.8 1.0 C A:THR84 3.7 14.4 1.0 HH22 A:ARG138 3.9 15.8 1.0 HG13 A:ILE81 4.0 23.9 1.0 N A:THR84 4.0 14.1 1.0 HG12 A:ILE81 4.0 23.9 1.0 O A:HOH525 4.2 21.0 1.0 O A:HOH570 4.2 23.9 1.0 CA A:THR84 4.2 13.7 1.0 CA A:ASP82 4.3 17.5 1.0 CB A:THR84 4.3 17.5 1.0 C A:ASP82 4.4 14.2 1.0 CG1 A:ILE81 4.5 20.1 1.0 HA A:ILE81 4.5 22.2 1.0 N A:ASP82 4.5 14.8 1.0 O A:HOH751 4.5 33.5 1.0 O A:HOH758 4.7 38.5 1.0 CA A:ILE81 4.7 18.6 1.0 NH2 A:ARG138 4.7 13.4 1.0 N A:HIS83 4.7 13.5 1.0 O A:ASP82 4.7 20.1 1.0 HA2 A:GLY85 4.7 20.4 1.0 H A:HIS83 4.8 15.9 1.0 HG22 A:THR84 4.8 23.7 1.0 N A:GLY85 4.8 17.5 1.0 HH21 A:ARG138 4.9 15.8 1.0

Sodium binding site 2 out of 2 in the GH5-4 Broad Specificity Endoglucanase From Ruminococcus Champanellensis


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of GH5-4 Broad Specificity Endoglucanase From Ruminococcus Champanellensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Na404 b:21.6 occ:1.00 O B:HOH768 2.2 27.9 1.0 O B:ILE81 2.4 15.2 1.0 O B:HOH694 2.4 17.9 1.0 O B:THR84 2.5 15.8 1.0 O B:HOH636 2.6 26.7 1.0 O B:HOH732 2.8 29.7 1.0 H B:THR84 3.2 18.2 1.0 HA B:ASP82 3.5 16.1 1.0 HB B:THR84 3.6 19.0 1.0 C B:ILE81 3.6 13.4 1.0 C B:THR84 3.6 13.9 1.0 HG12 B:ILE81 3.9 18.0 1.0 N B:THR84 3.9 15.3 1.0 HH22 B:ARG138 4.0 14.6 1.0 CA B:THR84 4.1 13.3 1.0 CA B:ASP82 4.2 13.6 1.0 O B:HOH673 4.2 18.2 1.0 HG13 B:ILE81 4.2 18.0 1.0 C B:ASP82 4.3 16.6 1.0 O B:HOH514 4.3 19.0 1.0 CB B:THR84 4.3 16.0 1.0 N B:ASP82 4.4 13.5 1.0 HA B:ILE81 4.4 13.6 1.0 CG1 B:ILE81 4.5 15.2 1.0 O B:ASP82 4.6 16.6 1.0 N B:HIS83 4.6 12.7 1.0 CA B:ILE81 4.6 11.5 1.0 O B:HOH759 4.6 31.3 1.0 NH2 B:ARG138 4.7 12.3 1.0 HA2 B:GLY85 4.7 21.9 1.0 H B:HIS83 4.7 15.0 1.0 N B:GLY85 4.8 13.8 1.0 HG22 B:THR84 4.8 24.0 1.0 HH21 B:ARG138 4.9 14.6 1.0

C.M.Bianchetti, C.A.Bingman, R.W.Smith, E.M.Glasgow, B.G.Fox. GH5-4 Broad Specificity Endoglucanase From Ruminococcus Champanellensis To Be Published.