Sodium in PDB 6wqa: 2.0A Angstrom A2A Adenosine Receptor Structure Using Xfel Data Collected in Helium Atmosphere.

Protein crystallography data

The structure of 2.0A Angstrom A2A Adenosine Receptor Structure Using Xfel Data Collected in Helium Atmosphere., PDB code: 6wqa was solved by M.-Y.Lee, J.Geiger, A.Ishchenko, G.W.Han, A.Barty, T.A.White, C.Gati, A.Batyuk, M.S.Hunter, A.Aquila, S.Boutet, U.Weierstall, V.Cherezov, W.Liu, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.70 / 2.00
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 40.350, 180.500, 142.700, 90.00, 90.00, 90.00
R / Rfree (%) 19.3 / 21.6

Sodium Binding Sites:

The binding sites of Sodium atom in the 2.0A Angstrom A2A Adenosine Receptor Structure Using Xfel Data Collected in Helium Atmosphere. (pdb code 6wqa). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the 2.0A Angstrom A2A Adenosine Receptor Structure Using Xfel Data Collected in Helium Atmosphere., PDB code: 6wqa:

Sodium binding site 1 out of 1 in 6wqa

Go back to Sodium Binding Sites List in 6wqa
Sodium binding site 1 out of 1 in the 2.0A Angstrom A2A Adenosine Receptor Structure Using Xfel Data Collected in Helium Atmosphere.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of 2.0A Angstrom A2A Adenosine Receptor Structure Using Xfel Data Collected in Helium Atmosphere. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na1201

b:35.4
occ:1.00
OD1 A:ASP52 2.4 32.4 1.0
O A:HOH1365 2.4 33.5 1.0
OG A:SER91 2.4 27.3 1.0
O A:HOH1359 2.6 28.3 1.0
O A:HOH1334 2.6 34.2 1.0
CB A:SER91 3.3 25.5 1.0
CG A:ASP52 3.4 31.1 1.0
OD2 A:ASP52 3.8 31.8 1.0
CD1 A:LEU48 4.1 32.5 1.0
O A:HOH1330 4.1 38.6 1.0
OD1 A:ASN280 4.1 31.9 1.0
OG A:SER281 4.4 36.7 1.0
O A:LEU87 4.6 28.7 1.0
O A:HOH1333 4.6 30.8 1.0
CB A:ASP52 4.7 26.0 1.0
CA A:SER91 4.7 23.9 1.0
CB A:ALA51 4.7 26.3 1.0
CE2 A:PHE242 4.7 30.3 1.0
N A:ASP52 4.7 25.2 1.0
O A:LEU48 4.8 30.0 1.0
CA A:ASP52 4.8 25.1 1.0
O A:HOH1379 4.8 44.4 1.0
C A:ALA51 4.9 28.7 1.0
CD2 A:PHE242 5.0 28.1 1.0

Reference:

M.-Y.Lee, J.Geiger, A.Ishchenko, G.W.Han, A.Barty, T.A.White, C.Gati, A.Batyuk, M.S.Hunter, A.Aquila, S.Boutet, U.Weierstall, V.Cherezov, W.Liu. Harnessing the Power of An X-Ray Laser For Serial Crystallography of Membrane Proteins Crystallized in Lipidic Cubic Phase Iucrj V. 7 976 2020.
ISSN: ESSN 2052-2525
DOI: 10.1107/S2052252520012701
Page generated: Tue Dec 15 15:43:27 2020

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