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Sodium in PDB 6su8: Highly Thermostable Endoglucanase CEL7B

Protein crystallography data

The structure of Highly Thermostable Endoglucanase CEL7B, PDB code: 6su8 was solved by C.Schiano-Di-Cola, J.P.Morth, P.Westh, K.Borch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 2.48
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 113.367, 263.212, 197.824, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 19

Sodium Binding Sites:

The binding sites of Sodium atom in the Highly Thermostable Endoglucanase CEL7B (pdb code 6su8). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Highly Thermostable Endoglucanase CEL7B, PDB code: 6su8:

Sodium binding site 1 out of 1 in 6su8

Go back to Sodium Binding Sites List in 6su8
Sodium binding site 1 out of 1 in the Highly Thermostable Endoglucanase CEL7B


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Highly Thermostable Endoglucanase CEL7B within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Na508

b:0.7
occ:1.00
O C:THR85 3.7 73.0 1.0
O C:HOH667 3.7 87.4 1.0
O C:HOH666 3.7 77.2 1.0
CB C:HIS84 3.7 68.6 1.0
ND1 C:HIS84 3.8 0.4 1.0
CG C:HIS84 4.1 94.5 1.0
N C:THR85 4.3 60.4 1.0
C C:THR85 4.3 68.0 1.0
O C:HOH681 4.3 79.9 1.0
CA C:HIS84 4.5 59.6 1.0
C C:HIS84 4.7 59.3 1.0
CE1 C:HIS84 4.9 0.1 1.0
CB C:ASP86 4.9 72.3 1.0
CA C:THR85 5.0 60.3 1.0

Reference:

C.Schiano-Di-Cola, B.Kolaczkowski, T.H.Sorensen, S.J.Christensen, A.M.Cavaleiro, M.S.Windahl, K.Borch, J.P.Morth, P.Westh. Structural and Biochemical Characterization of A Family 7 Highly Thermostable Endoglucanase From the Fungus Rasamsonia Emersonii. Febs J. 2019.
ISSN: ISSN 1742-464X
PubMed: 31755197
DOI: 10.1111/FEBS.15151
Page generated: Tue Oct 8 13:32:00 2024

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