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Sodium in PDB 6skp: Oxa-10_IPM. Structural Insight to the Enhanced Carbapenem Efficiency of Oxa-655 Compared to Oxa-10.

Enzymatic activity of Oxa-10_IPM. Structural Insight to the Enhanced Carbapenem Efficiency of Oxa-655 Compared to Oxa-10.

All present enzymatic activity of Oxa-10_IPM. Structural Insight to the Enhanced Carbapenem Efficiency of Oxa-655 Compared to Oxa-10.:
3.5.2.6;

Protein crystallography data

The structure of Oxa-10_IPM. Structural Insight to the Enhanced Carbapenem Efficiency of Oxa-655 Compared to Oxa-10., PDB code: 6skp was solved by H.-K.S.Leiros, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 45.00 / 1.89
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 94.933, 124.794, 48.480, 90.00, 90.00, 90.00
R / Rfree (%) 21.6 / 24.8

Sodium Binding Sites:

The binding sites of Sodium atom in the Oxa-10_IPM. Structural Insight to the Enhanced Carbapenem Efficiency of Oxa-655 Compared to Oxa-10. (pdb code 6skp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Oxa-10_IPM. Structural Insight to the Enhanced Carbapenem Efficiency of Oxa-655 Compared to Oxa-10., PDB code: 6skp:

Sodium binding site 1 out of 1 in 6skp

Go back to Sodium Binding Sites List in 6skp
Sodium binding site 1 out of 1 in the Oxa-10_IPM. Structural Insight to the Enhanced Carbapenem Efficiency of Oxa-655 Compared to Oxa-10.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Oxa-10_IPM. Structural Insight to the Enhanced Carbapenem Efficiency of Oxa-655 Compared to Oxa-10. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:66.2
occ:1.00
 HA A:THR194 2.6 28.3 1.0
HH22 A:ARG109 2.7 49.5 1.0
HA B:ALA197 3.1 50.0 1.0
HE22 A:GLN113 3.1 59.1 1.0
C B:ALA197 3.1 42.8 1.0
O A:THR194 3.2 24.9 1.0
O A:HOH553 3.2 43.6 1.0
NH2 A:ARG109 3.3 41.2 1.0
HH21 A:ARG109 3.3 49.5 1.0
N B:PRO198 3.3 46.8 1.0
CA A:THR194 3.4 23.6 1.0
HE21 A:GLN113 3.4 59.1 1.0
NE2 A:GLN113 3.4 49.2 1.0
O B:ALA197 3.4 40.1 1.0
CA B:ALA197 3.5 41.6 1.0
HA B:PRO198 3.5 57.7 1.0
HB A:THR194 3.5 29.5 1.0
HG22 A:THR194 3.5 28.5 1.0
HD3 B:PRO198 3.6 58.9 1.0
C A:THR194 3.7 24.4 1.0
N B:ALA197 3.7 37.5 1.0
HG3 B:PRO198 3.7 61.5 1.0
HB1 B:ALA196 3.8 38.9 1.0
CB A:THR194 3.8 24.5 1.0
C B:ALA196 3.9 35.4 1.0
O B:ALA196 3.9 36.3 1.0
CA B:PRO198 3.9 48.0 1.0
CD B:PRO198 3.9 49.0 1.0
O A:VAL193 4.1 25.3 1.0
H B:ALA197 4.2 45.1 1.0
CG2 A:THR194 4.2 23.7 1.0
CG B:PRO198 4.3 51.2 1.0
HB3 B:ALA196 4.4 38.9 1.0
CD A:GLN113 4.4 45.5 1.0
CB B:ALA196 4.4 32.4 1.0
CZ A:ARG109 4.5 39.2 1.0
N A:THR194 4.6 23.1 1.0
HH12 A:ARG109 4.6 48.7 1.0
CB B:PRO198 4.7 50.7 1.0
CA B:ALA196 4.8 32.6 1.0
HG21 A:THR194 4.8 28.5 1.0
HG23 A:THR194 4.8 28.5 1.0
C A:VAL193 4.8 24.4 1.0
HD2 B:PRO198 4.8 58.9 1.0
HB3 B:PRO198 4.8 60.9 1.0
OE1 A:GLN113 4.9 46.2 1.0
CB B:ALA197 4.9 42.4 1.0
N A:GLU195 4.9 24.7 1.0

Reference:

H.-K.S.Leiros, A.M.Thomassen, O.Samuelsen, C.-F.Flach, S.D.Kotsakis, D.G.J.Larsson. Structural Insight to the Enhanced Carbapenem Efficiency of Oxa-655 Compared to Oxa-10. To Be Published.
Page generated: Tue Dec 15 13:00:27 2020

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