Sodium in PDB 6sg0: Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide

Enzymatic activity of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide

All present enzymatic activity of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide:
4.2.1.1;

Protein crystallography data

The structure of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide, PDB code: 6sg0 was solved by S.Gloeckner, A.Heine, G.Klebe, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.03 / 1.13
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 42.397, 41.752, 72.211, 90.00, 104.45, 90.00
R / Rfree (%) 12.6 / 14.5

Other elements in 6sg0:

The structure of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide also contains other interesting chemical elements:

Mercury (Hg) 3 atoms
Zinc (Zn) 1 atom
Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide (pdb code 6sg0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide, PDB code: 6sg0:

Sodium binding site 1 out of 1 in 6sg0

Go back to Sodium Binding Sites List in 6sg0
Sodium binding site 1 out of 1 in the Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:27.1
occ:0.57
O A:THR37 2.2 14.3 0.4
O A:HOH427 2.5 31.4 1.0
O A:THR37 2.5 14.6 0.6
HG22 A:THR37 2.6 23.5 0.6
O A:HOH548 2.7 16.6 1.0
HG22 A:THR37 2.9 16.0 0.4
C A:THR37 3.3 13.4 0.4
HA A:ALA38 3.4 15.6 0.4
CG2 A:THR37 3.4 19.6 0.6
HG23 A:THR37 3.5 23.5 0.6
C A:THR37 3.6 13.5 0.6
HA A:ALA38 3.7 13.3 0.6
CG2 A:THR37 3.7 13.3 0.4
HG23 A:THR37 3.7 16.0 0.4
O A:HOH532 3.8 20.1 1.0
H A:LYS39 3.8 15.5 0.6
HG21 A:THR37 4.0 23.5 0.6
HB2 A:LYS39 4.0 17.9 1.0
HB3 A:GLN255 4.0 19.2 0.4
HA A:GLN255 4.0 17.4 0.4
CA A:ALA38 4.1 13.0 0.4
H A:ILE256 4.1 11.9 0.6
N A:ALA38 4.1 13.3 0.4
H A:LYS39 4.1 15.5 0.4
HB3 A:GLN255 4.1 19.0 0.6
CG A:GLN255 4.2 15.4 0.4
HA A:GLN255 4.2 15.3 0.6
H A:ILE256 4.3 11.9 0.4
HA A:THR37 4.3 14.5 0.4
O A:ILE256 4.3 10.4 1.0
N A:LYS39 4.3 12.9 1.0
CA A:THR37 4.3 12.1 0.4
HG21 A:THR37 4.4 16.0 0.4
C A:ALA38 4.4 13.6 0.4
CA A:ALA38 4.4 11.1 0.6
N A:ALA38 4.4 12.3 0.6
CB A:THR37 4.4 18.4 0.6
CB A:GLN255 4.5 16.0 0.4
CA A:THR37 4.5 16.0 0.6
CB A:THR37 4.5 13.0 0.4
HB A:THR37 4.6 22.0 0.6
HA A:THR37 4.6 19.2 0.6
HB3 A:LYS39 4.7 17.9 1.0
CA A:GLN255 4.7 14.5 0.4
HB A:THR37 4.7 15.6 0.4
CB A:LYS39 4.7 14.9 1.0
N A:ILE256 4.8 9.9 1.0
C A:ALA38 4.8 12.2 0.6
O A:HOH561 4.8 19.1 1.0
CB A:GLN255 4.9 15.8 0.6
H A:ALA38 4.9 15.9 0.4
CA A:GLN255 4.9 12.8 0.6

Reference:

S.Gloeckner, A.Heine, G.Klebe. Atomic Resolution Structure of Human Carbonic Anhydrase II in Complex with Furosemide To Be Published.
Page generated: Tue Dec 15 12:59:41 2020

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