Sodium in PDB 6s4l: Structure of Human KCTD1

The structure of Structure of Human KCTD1, PDB code: 6s4l was solved by D.M.Pinkas, J.C.Bufton, A.E.Fox, A.C.W.Pike, J.A.Newman, T.Krojer, L.Shrestha, N.A.Burgess-Brown, F.Von Delft, C.Arrowsmith, A.Edwards, C.Bountra, A.N.Bullock, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	70.57 / 2.42
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	67.454, 95.870, 104.343, 90.00, 92.16, 90.00
R / Rfree (%)	24.5 / 28.1

The structure of Structure of Human KCTD1 also contains other interesting chemical elements:

Iodine

(I)

2 atoms

The binding sites of Sodium atom in the Structure of Human KCTD1 (pdb code 6s4l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the Structure of Human KCTD1, PDB code: 6s4l:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in the Structure of Human KCTD1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Human KCTD1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na301 b:59.3 occ:1.00 O B:GLY222 2.4 51.9 1.0 O C:GLY222 2.5 61.2 1.0 O E:GLY222 2.5 64.4 1.0 O D:GLY222 2.5 59.3 1.0 O A:GLY222 2.6 67.5 1.0 I B:IOD302 3.5 47.2 1.0 C B:GLY222 3.6 64.7 1.0 C C:GLY222 3.7 68.4 1.0 C D:GLY222 3.7 66.9 1.0 C E:GLY222 3.7 73.0 1.0 C A:GLY222 3.8 73.3 1.0 CA B:GLY223 4.0 58.6 1.0 CA C:GLY223 4.2 84.5 1.0 I B:IOD301 4.3 64.3 1.0 N B:GLY223 4.3 70.3 1.0 CA E:GLY223 4.3 78.9 1.0 N C:GLY223 4.4 85.4 1.0 CA A:GLY223 4.5 69.5 1.0 N E:GLY223 4.5 81.9 1.0 CA D:GLY223 4.5 81.6 1.0 N D:GLY222 4.5 73.9 1.0 N D:GLY223 4.5 73.0 1.0 N A:GLY223 4.6 67.7 1.0 N A:GLY222 4.6 53.0 1.0 N C:GLY222 4.7 61.0 1.0 N E:GLY222 4.7 76.8 1.0 CA D:GLY222 4.7 65.8 1.0 CA A:GLY222 4.8 65.3 1.0 N B:GLY222 4.8 56.0 1.0 CA C:GLY222 4.8 63.9 1.0 CA B:GLY222 4.8 57.9 1.0 CA E:GLY222 4.8 81.4 1.0

Sodium binding site 2 out of 2 in the Structure of Human KCTD1


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of Structure of Human KCTD1 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na302 b:43.5 occ:1.00 OG D:SER220 3.2 56.7 1.0 O C:SER220 3.2 68.1 1.0 O E:SER220 3.3 38.4 1.0 OG C:SER220 3.3 46.2 1.0 O B:SER220 3.4 47.7 1.0 O A:SER220 3.4 62.5 1.0 O D:SER220 3.5 53.0 1.0 OG A:SER220 3.5 65.0 1.0 OG E:SER220 3.6 51.1 1.0 OG B:SER220 3.7 55.9 1.0 C C:SER220 4.3 61.4 1.0 C E:SER220 4.4 55.7 1.0 C D:SER220 4.4 58.3 1.0 C A:SER220 4.4 55.2 1.0 C B:SER220 4.5 50.1 1.0 CB D:SER220 4.5 45.2 1.0 CB C:SER220 4.6 47.7 1.0 CB A:SER220 4.7 50.5 1.0 CB E:SER220 4.7 46.8 1.0 CB B:SER220 4.8 62.8 1.0 I B:IOD302 4.9 47.2 1.0 CA D:SER220 4.9 50.1 1.0 CA C:SER220 4.9 58.8 1.0 CA A:SER220 5.0 56.4 1.0 CA E:SER220 5.0 49.7 1.0

D.M.Pinkas, J.C.Bufton, A.E.Fox, A.C.W.Pike, J.A.Newman, T.Krojer, L.Shrestha, N.A.Burgess-Brown, F.Von Delft, C.Arrowsmith, A.Edwards, C.Bountra, A.N.Bullock. Structure of Human KCTD1 To Be Published.