Sodium in PDB 6s09: C-Terminally Extended and N-Terminally Truncated Variant of Fima E. Coli at 1.5 Angstrom Resolution

The structure of C-Terminally Extended and N-Terminally Truncated Variant of Fima E. Coli at 1.5 Angstrom Resolution, PDB code: 6s09 was solved by D.Zyla, B.Echeverria, R.Glockshuber, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	47.69 / 1.50
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	92.310, 105.230, 106.990, 90.00, 90.00, 90.00
R / Rfree (%)	16.9 / 20.6

The binding sites of Sodium atom in the C-Terminally Extended and N-Terminally Truncated Variant of Fima E. Coli at 1.5 Angstrom Resolution (pdb code 6s09). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the C-Terminally Extended and N-Terminally Truncated Variant of Fima E. Coli at 1.5 Angstrom Resolution, PDB code: 6s09:

Sodium binding site 1 out of 1 in the C-Terminally Extended and N-Terminally Truncated Variant of Fima E. Coli at 1.5 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of C-Terminally Extended and N-Terminally Truncated Variant of Fima E. Coli at 1.5 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ C:Na202 b:20.1 occ:1.00 OD1 C:ASN111 2.7 14.6 1.0 HG23 H:THR104 2.8 16.6 1.0 O H:HOH389 2.8 11.8 1.0 O H:HOH344 3.0 12.9 1.0 O C:THR105 3.1 12.2 1.0 HB3 C:ASN111 3.1 15.8 1.0 HA C:LEU106 3.3 16.7 1.0 OD1 C:ASN107 3.5 13.0 1.0 O H:THR105 3.5 13.7 1.0 CG C:ASN111 3.5 13.2 1.0 O C:HOH357 3.6 13.8 1.0 HG22 C:THR104 3.6 16.9 1.0 H C:ASN107 3.6 15.5 1.0 CG2 H:THR104 3.6 13.8 1.0 HG21 H:THR104 3.7 16.6 1.0 CB C:ASN111 3.7 13.2 1.0 HG23 C:THR104 3.7 16.9 1.0 HA C:ASN111 3.8 16.6 1.0 HG21 C:THR104 3.8 16.9 1.0 CG2 C:THR104 3.9 14.1 1.0 HG22 H:THR104 4.0 16.6 1.0 H C:THR112 4.0 14.4 1.0 H H:THR105 4.1 14.4 1.0 HD23 C:LEU106 4.1 17.1 1.0 O C:HOH436 4.1 11.6 1.0 C C:THR105 4.2 14.1 1.0 CA C:LEU106 4.2 13.9 1.0 CA C:ASN111 4.3 13.8 1.0 N C:ASN107 4.3 12.9 1.0 CG C:ASN107 4.4 13.4 1.0 N H:THR105 4.5 12.0 1.0 HB2 C:ASN111 4.6 15.8 1.0 HB H:THR105 4.6 19.7 1.0 C H:THR105 4.6 12.2 1.0 N C:THR112 4.7 12.0 1.0 C C:LEU106 4.7 13.5 1.0 N C:LEU106 4.7 14.2 1.0 HA H:THR104 4.7 16.1 1.0 ND2 C:ASN111 4.8 13.7 1.0 CB H:THR104 4.8 14.6 1.0 O C:THR112 4.8 12.8 1.0 HD21 C:ASN107 4.9 14.1 1.0 O H:THR112 4.9 11.9 1.0 CD2 C:LEU106 5.0 14.3 1.0 C C:ASN111 5.0 13.0 1.0

D.Zyla, B.Echeverria, R.Glockshuber. Donor Strand Sequence, Rather Than Donor Strand Orientation, Determines the Stability and Non-Equilibrium Folding of the Type 1 Pilus Subunit Fima. J.Biol.Chem. V. 295 12437 2020.
ISSN: ESSN 1083-351X
PubMed: 32651228
DOI: 10.1074/JBC.RA120.014324