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Sodium in PDB 6rzp: Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator.

Enzymatic activity of Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator.

All present enzymatic activity of Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator.:
3.4.21.64;

Protein crystallography data

The structure of Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator., PDB code: 6rzp was solved by J.Sandy, E.Sandy, J.Sanchez-Weatherby, H.Mikolajek, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 57.13 / 2.20
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 68.368, 68.368, 103.978, 90.00, 90.00, 90.00
R / Rfree (%) 10.6 / 16.1

Other elements in 6rzp:

The structure of Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator. also contains other interesting chemical elements:

Calcium (Ca) 1 atom
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator. (pdb code 6rzp). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator., PDB code: 6rzp:

Sodium binding site 1 out of 1 in 6rzp

Go back to Sodium Binding Sites List in 6rzp
Sodium binding site 1 out of 1 in the Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator.


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator. within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na306

b:35.6
occ:1.00
 ND2 A:ASN161 2.2 24.3 1.0
H A:SER224 2.3 12.0 1.0
O A:HOH560 2.5 34.0 1.0
HD21 A:ASN161 2.6 29.1 1.0
OG A:SER224 2.7 21.1 1.0
HA3 A:GLY222 2.8 14.2 1.0
HB2 A:SER224 2.8 18.3 1.0
O A:HOH490 2.9 45.1 1.0
HG A:SER224 2.9 25.3 1.0
N A:SER224 3.1 10.0 1.0
CG A:ASN161 3.2 23.5 1.0
CB A:SER224 3.2 15.3 1.0
H A:THR223 3.3 9.4 1.0
OD1 A:ASN161 3.4 22.8 1.0
N A:THR223 3.5 7.8 1.0
HG1 A:THR223 3.6 11.0 1.0
CA A:GLY222 3.6 11.9 1.0
CA A:SER224 3.8 11.2 1.0
C A:GLY222 3.8 9.9 1.0
HA2 A:GLY222 3.8 14.2 1.0
HB3 A:SER224 4.1 18.3 1.0
OG1 A:THR223 4.1 9.2 1.0
C A:THR223 4.2 5.6 1.0
HA A:SER224 4.3 13.4 1.0
CA A:THR223 4.4 9.1 1.0
CB A:ASN161 4.6 14.4 1.0
H A:MET225 4.6 8.3 1.0
O A:SER221 4.7 12.7 1.0
HB2 A:ASN161 4.7 17.3 1.0
O A:GLY222 4.7 9.6 1.0
N A:GLY222 4.8 10.2 1.0
NE2 A:HIS69 4.9 16.9 1.0
HE1 A:MET225 4.9 26.0 1.0
CB A:THR223 4.9 9.5 1.0
C A:SER224 4.9 10.9 1.0
HB3 A:ASN161 4.9 17.3 1.0

Reference:

J.Sandy, E.Sandy, J.Sanchez-Weatherby, H.Mikolajek. Multicrystal Structure of Proteinase K at Room Temperature Using A Multilayer Monochromator. To Be Published.
Page generated: Tue Oct 8 13:21:39 2024

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