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Sodium in PDB 6rw7: An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae

Protein crystallography data

The structure of An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae, PDB code: 6rw7 was solved by C.A.Fowler, F.Sabbadin, L.Ciano, G.R.Hemsworth, L.Elias, N.C.Bruce, S.Mcqueen-Mason, P.Walton, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.25 / 1.40
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 36.644, 62.516, 43.185, 90.00, 99.13, 90.00
R / Rfree (%) 15.3 / 17.5

Other elements in 6rw7:

The structure of An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae also contains other interesting chemical elements:

Copper (Cu) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae (pdb code 6rw7). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae, PDB code: 6rw7:

Sodium binding site 1 out of 1 in 6rw7

Go back to Sodium Binding Sites List in 6rw7
Sodium binding site 1 out of 1 in the An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of An AA10 Lpmo From the Shipworm Symbiont Teredinibacter Turnerae within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na301

b:15.8
occ:1.00
O A:VAL157 2.3 14.9 1.0
O A:PHE151 2.3 15.6 1.0
O A:HOH605 2.4 23.4 1.0
O A:HOH597 2.4 28.8 1.0
O A:ASN154 2.4 13.1 1.0
O A:HOH604 2.4 19.6 1.0
C A:PHE151 3.4 14.3 1.0
C A:ASN154 3.4 13.0 1.0
C A:VAL157 3.5 14.3 1.0
CA A:SER155 4.0 15.3 1.0
N A:SER155 4.1 14.6 1.0
N A:VAL157 4.1 12.3 1.0
N A:SER152 4.2 14.4 1.0
N A:ASN154 4.3 12.7 1.0
CA A:SER152 4.3 15.7 1.0
C A:SER155 4.3 14.9 1.0
CA A:PHE151 4.3 13.0 1.0
CA A:VAL157 4.4 12.4 1.0
CB A:PHE151 4.4 12.8 1.0
N A:GLU158 4.4 14.0 1.0
CA A:ASN154 4.5 13.2 1.0
CA A:GLU158 4.5 15.9 1.0
O A:SER155 4.5 17.3 1.0
C A:SER152 4.6 15.2 1.0
O A:HOH580 4.6 16.3 1.0
N A:ALA156 4.8 13.7 1.0
CB A:VAL157 4.8 12.0 1.0
O A:SER152 4.9 16.0 1.0
N A:THR153C 5.0 13.2 1.0

Reference:

C.A.Fowler, F.Sabbadin, L.Ciano, G.R.Hemsworth, L.Elias, N.Bruce, S.Mcqueen-Mason, G.J.Davies, P.H.Walton. Discovery, Activity and Characterisation of An AA10 Lytic Polysaccharide Oxygenase From the Shipworm Symbiontteredinibacter Turnerae. Biotechnol Biofuels V. 12 232 2019.
ISSN: ESSN 1754-6834
PubMed: 31583018
DOI: 10.1186/S13068-019-1573-X
Page generated: Tue Dec 15 12:56:20 2020

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