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Sodium in PDB 6ru6: Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide

Enzymatic activity of Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide

All present enzymatic activity of Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide:
2.7.11.1; 2.7.11.26;

Protein crystallography data

The structure of Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide, PDB code: 6ru6 was solved by A.Chaikuad, M.Tuppi, J.Gebel, C.H.Arrowsmith, A.M.Edwards, C.Bountra, V.Dotsch, S.Knapp, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.26 / 2.05
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 171.937, 48.924, 85.199, 90.00, 109.72, 90.00
R / Rfree (%) 21.1 / 25.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide (pdb code 6ru6). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide, PDB code: 6ru6:

Sodium binding site 1 out of 1 in 6ru6

Go back to Sodium Binding Sites List in 6ru6
Sodium binding site 1 out of 1 in the Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:54.0
occ:1.00
 OD1 A:ASN143 2.2 50.6 1.0
O A:TYR286 2.4 43.7 1.0
O A:HOH475 2.5 64.1 1.0
OD1 A:ASN291 2.6 46.1 1.0
O A:HOH415 2.6 51.8 1.0
CG A:ASN291 3.3 47.9 1.0
CG A:ASN143 3.4 50.4 1.0
C A:TYR286 3.5 45.5 1.0
ND2 A:ASN291 3.6 41.6 1.0
CD2 A:PHE288 3.6 38.2 1.0
CE2 A:PHE288 3.8 36.2 1.0
ND2 A:ASN143 4.0 52.1 1.0
CB A:TYR286 4.1 51.9 1.0
N A:VAL287 4.4 44.2 1.0
CA A:VAL287 4.4 43.8 1.0
CA A:TYR286 4.4 48.5 1.0
CB A:ASN143 4.5 46.6 1.0
CB A:ASN291 4.5 46.1 1.0
N A:PHE288 4.5 37.4 1.0
O A:GLY142 4.6 46.5 1.0
CA A:ASN143 4.7 45.4 1.0
CG A:PHE288 4.8 37.0 1.0

Reference:

A.Chaikuad, M.Tuppi, J.Gebel, C.H.Arrowsmith, A.M.Edwards, C.Bountra, V.Dotsch, S.Knapp, Structural Genomics Consortium (Sgc). Crystal Structure of Casein Kinase I Delta (CK1D) in Complex with Monophosphorylated P63 PAD1P Peptide To Be Published.
Page generated: Tue Oct 8 13:20:11 2024

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