Sodium in PDB 6rt3: Native Tetragonal Lysozyme - Synchrotron Data

All present enzymatic activity of Native Tetragonal Lysozyme - Synchrotron Data:
3.2.1.17;

The structure of Native Tetragonal Lysozyme - Synchrotron Data, PDB code: 6rt3 was solved by P.J.B.Pereira, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	22.22 / 1.05
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.863, 78.863, 36.800, 90.00, 90.00, 90.00
R / Rfree (%)	12.6 / 14.7

The structure of Native Tetragonal Lysozyme - Synchrotron Data also contains other interesting chemical elements:

Chlorine

(Cl)

8 atoms

The binding sites of Sodium atom in the Native Tetragonal Lysozyme - Synchrotron Data (pdb code 6rt3). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Native Tetragonal Lysozyme - Synchrotron Data, PDB code: 6rt3:

Sodium binding site 1 out of 1 in the Native Tetragonal Lysozyme - Synchrotron Data


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Native Tetragonal Lysozyme - Synchrotron Data within 5.0Å range: probe atom residue distance (Å) B Occ A:Na216 b:11.6 occ:1.00 O A:SER60 2.3 11.4 1.0 O A:HOH395 2.4 13.2 1.0 O A:CYS64 2.4 10.3 1.0 O A:ARG73 2.4 13.3 1.0 O A:HOH369 2.4 11.0 1.0 OG A:SER72 2.5 13.7 1.0 HB2 A:SER72 2.9 17.4 1.0 HA A:ASN65 3.0 12.2 1.0 CB A:SER72 3.3 14.5 1.0 HB2 A:SER60 3.5 11.4 1.0 C A:ARG73 3.5 13.6 1.0 C A:CYS64 3.5 9.9 1.0 C A:SER60 3.5 9.9 1.0 HB A:THR69 3.8 12.8 1.0 HA A:SER60 3.8 10.6 1.0 HB3 A:SER72 3.9 17.4 1.0 H A:ARG73 3.9 18.1 1.0 N A:ARG73 3.9 15.1 1.0 H A:CYS64 3.9 11.4 1.0 CA A:ASN65 3.9 10.2 1.0 HB2 A:ASN74 3.9 17.3 1.0 H A:ASP66 3.9 11.0 1.0 CA A:SER60 4.1 8.8 1.0 HA A:ASN74 4.1 16.2 1.0 N A:ASN65 4.1 9.7 1.0 C A:SER72 4.2 15.3 1.0 CB A:SER60 4.2 9.5 1.0 CA A:ARG73 4.3 15.1 1.0 CA A:SER72 4.3 15.0 1.0 N A:ASN74 4.4 13.4 1.0 N A:CYS64 4.5 9.5 1.0 O A:HOH411 4.6 35.7 1.0 CA A:ASN74 4.6 13.5 1.0 C A:ARG61 4.6 13.2 1.0 O A:ARG61 4.6 14.9 1.0 HB2 A:ASN65 4.6 14.1 1.0 N A:ARG61 4.6 10.8 1.0 HA A:ARG61 4.6 15.4 1.0 N A:ASP66 4.6 9.1 1.0 CA A:CYS64 4.6 9.6 1.0 OD1 A:ASN65 4.7 13.1 1.0 HA A:ARG73 4.7 18.1 1.0 CL A:CL210 4.7 13.4 1.0 CB A:ASN74 4.7 14.4 1.0 CB A:THR69 4.7 10.6 1.0 O A:SER72 4.8 17.1 1.0 CB A:ASN65 4.8 11.8 1.0 C A:ASN65 4.8 9.3 1.0 H A:TRP63 4.8 12.7 1.0 HG21 A:THR69 4.9 13.7 1.0 CA A:ARG61 4.9 12.8 1.0 HB3 A:SER60 4.9 11.4 1.0 HG1 A:THR69 4.9 12.7 1.0 HG A:SER60 4.9 11.4 1.0 N A:TRP62 4.9 11.5 1.0 HA A:SER72 4.9 18.0 1.0 H A:ASN65 4.9 11.7 1.0

P.J.B.Pereira, P.J.B.Pereira. N/A N/A.