Sodium in PDB 6rt1: Native Tetragonal Lysozyme - Home Source Data

All present enzymatic activity of Native Tetragonal Lysozyme - Home Source Data:
3.2.1.17;

The structure of Native Tetragonal Lysozyme - Home Source Data, PDB code: 6rt1 was solved by P.J.B.Pereira, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	14.60 / 1.34
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	78.634, 78.634, 36.993, 90.00, 90.00, 90.00
R / Rfree (%)	12.2 / 16.2

The structure of Native Tetragonal Lysozyme - Home Source Data also contains other interesting chemical elements:

Chlorine

(Cl)

5 atoms

The binding sites of Sodium atom in the Native Tetragonal Lysozyme - Home Source Data (pdb code 6rt1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Native Tetragonal Lysozyme - Home Source Data, PDB code: 6rt1:

Sodium binding site 1 out of 1 in the Native Tetragonal Lysozyme - Home Source Data


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Native Tetragonal Lysozyme - Home Source Data within 5.0Å range: probe atom residue distance (Å) B Occ A:Na209 b:13.1 occ:1.00 O A:SER60 2.3 12.4 1.0 O A:HOH410 2.4 14.7 1.0 O A:HOH387 2.4 11.1 1.0 OG A:SER72 2.4 14.0 1.0 O A:ARG73 2.5 14.1 1.0 O A:CYS64 2.5 10.0 1.0 CB A:SER72 3.2 14.8 1.0 C A:SER60 3.4 10.1 1.0 C A:ARG73 3.5 13.4 1.0 C A:CYS64 3.5 9.1 1.0 N A:ARG73 3.9 16.1 1.0 CA A:ASN65 4.0 9.1 1.0 CA A:SER60 4.0 8.7 1.0 N A:ASN65 4.2 8.9 1.0 C A:SER72 4.2 17.0 1.0 CB A:SER60 4.2 9.8 1.0 CA A:ARG73 4.3 15.0 1.0 CA A:SER72 4.3 16.3 1.0 N A:ASN74 4.4 13.0 1.0 N A:CYS64 4.5 8.9 1.0 O A:HOH403 4.5 35.2 1.0 N A:ARG61 4.5 10.9 1.0 C A:ARG61 4.6 12.8 1.0 O A:ARG61 4.6 13.9 1.0 CA A:ASN74 4.6 12.3 1.0 CB A:THR69 4.6 9.2 1.0 N A:ASP66 4.7 7.7 1.0 CA A:CYS64 4.7 8.8 1.0 CL A:CL205 4.7 15.6 1.0 OD1 A:ASN65 4.7 12.8 1.0 CB A:ASN74 4.8 12.6 1.0 CA A:ARG61 4.8 13.3 1.0 O A:SER72 4.8 18.3 1.0 CB A:ASN65 4.9 10.4 1.0 C A:ASN65 4.9 7.3 1.0 N A:TRP62 4.9 11.3 1.0 O A:HOH430 5.0 31.6 1.0 O A:THR69 5.0 12.0 1.0

P.J.B.Pereira, P.J.B.Pereira. N/A N/A.