Sodium in PDB 6rgn: BTEA131

The structure of BTEA131, PDB code: 6rgn was solved by G.Davidov, R.Zarivach, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	36.39 / 2.01
Space group	P 43 21 2
Cell size a, b, c (Å), α, β, γ (°)	51.428, 51.428, 82.712, 90.00, 90.00, 90.00
R / Rfree (%)	17.3 / 23.2

The binding sites of Sodium atom in the BTEA131 (pdb code 6rgn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the BTEA131, PDB code: 6rgn:

Sodium binding site 1 out of 1 in the BTEA131


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of BTEA131 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na205 b:28.8 occ:0.50 O A:HOH304 2.8 22.5 1.0 OE2 A:GLU83 2.8 20.0 1.0 NE A:ARG108 3.7 19.9 1.0 O A:HOH332 3.7 21.6 1.0 CD A:GLU83 3.8 18.7 1.0 CD A:ARG108 3.8 16.8 1.0 CG A:GLU83 4.0 17.5 1.0 CG A:ARG108 4.2 16.0 1.0 OD1 A:ASN87 4.3 11.8 1.0 CZ A:ARG108 4.5 19.8 1.0 CB A:ARG108 4.6 15.2 1.0 O A:HOH350 4.6 21.2 1.0 NH2 A:ARG108 4.9 19.2 1.0 OE1 A:GLU83 5.0 19.1 1.0

A.Yahalom, G.Davidov, S.Kolusheva, H.Shaked, S.Barber-Zucker, R.Zarivach, J.H.Chill. Structure and Membrane-Targeting of A Bordetella Pertussis Effector N-Terminal Domain. Biochim Biophys Acta V.1861 83054 2019BIOMEMBR.
ISSN: ISSN 1879-2642
PubMed: 31487494
DOI: 10.1016/J.BBAMEM.2019.183054