Atomistry » Sodium » PDB 6r7k-6rjc » 6rgn
Atomistry »
  Sodium »
    PDB 6r7k-6rjc »
      6rgn »

Sodium in PDB 6rgn: BTEA131

Protein crystallography data

The structure of BTEA131, PDB code: 6rgn was solved by G.Davidov, R.Zarivach, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 36.39 / 2.01
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 51.428, 51.428, 82.712, 90.00, 90.00, 90.00
R / Rfree (%) 17.3 / 23.2

Sodium Binding Sites:

The binding sites of Sodium atom in the BTEA131 (pdb code 6rgn). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the BTEA131, PDB code: 6rgn:

Sodium binding site 1 out of 1 in 6rgn

Go back to Sodium Binding Sites List in 6rgn
Sodium binding site 1 out of 1 in the BTEA131


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of BTEA131 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na205

b:28.8
occ:0.50
O A:HOH304 2.8 22.5 1.0
OE2 A:GLU83 2.8 20.0 1.0
NE A:ARG108 3.7 19.9 1.0
O A:HOH332 3.7 21.6 1.0
CD A:GLU83 3.8 18.7 1.0
CD A:ARG108 3.8 16.8 1.0
CG A:GLU83 4.0 17.5 1.0
CG A:ARG108 4.2 16.0 1.0
OD1 A:ASN87 4.3 11.8 1.0
CZ A:ARG108 4.5 19.8 1.0
CB A:ARG108 4.6 15.2 1.0
O A:HOH350 4.6 21.2 1.0
NH2 A:ARG108 4.9 19.2 1.0
OE1 A:GLU83 5.0 19.1 1.0

Reference:

A.Yahalom, G.Davidov, S.Kolusheva, H.Shaked, S.Barber-Zucker, R.Zarivach, J.H.Chill. Structure and Membrane-Targeting of A Bordetella Pertussis Effector N-Terminal Domain. Biochim Biophys Acta V.1861 83054 2019BIOMEMBR.
ISSN: ISSN 1879-2642
PubMed: 31487494
DOI: 10.1016/J.BBAMEM.2019.183054
Page generated: Tue Dec 15 12:53:36 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy