Sodium in PDB 6r8a: Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with L-Methionine

Protein crystallography data

The structure of Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with L-Methionine, PDB code: 6r8a was solved by A.Alfieri, R.Pederzoli, A.Costa, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 49.19 / 3.10
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 95.480, 96.800, 114.790, 90.00, 90.00, 90.00
R / Rfree (%) 24.2 / 30.7

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with L-Methionine (pdb code 6r8a). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with L-Methionine, PDB code: 6r8a:

Sodium binding site 1 out of 1 in 6r8a

Go back to Sodium Binding Sites List in 6r8a
Sodium binding site 1 out of 1 in the Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with L-Methionine


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Arabidopsis Thaliana GLR3.3 Ligand-Binding Domain in Complex with L-Methionine within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na302

b:14.4
occ:1.00
CG A:TYR45 4.7 32.7 1.0
CD2 A:TYR45 4.7 32.8 1.0
CD1 A:TYR45 4.7 34.0 1.0
CE2 A:TYR45 4.9 32.8 1.0
CE1 A:TYR45 4.9 34.0 1.0
CZ A:TYR45 4.9 33.1 1.0

Reference:

A.Alfieri, F.G.Doccula, R.Pederzoli, M.Grenzi, M.C.Bonza, L.Luoni, A.Candeo, N.Romano Armada, A.Barbiroli, G.Valentini, T.R.Schneider, A.Bassi, M.Bolognesi, M.Nardini, A.Costa. The Structural Bases For Agonist Diversity in An Arabidopsis Thaliana Glutamate Receptor-Like Channel Proc.Natl.Acad.Sci.Usa 2019.
ISSN: ESSN 1091-6490
DOI: 10.1073/PNAS.1905142117
Page generated: Tue Dec 15 12:52:00 2020

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