Sodium in PDB 6qsr: The Dehydratase Heterocomplex Apei:P From Xenorhabdus Doucetiae

The structure of The Dehydratase Heterocomplex Apei:P From Xenorhabdus Doucetiae, PDB code: 6qsr was solved by G.L.C.Grammbitter, M.Schmalhofer, M.Groll, H.Bode, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	15.00 / 1.85
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	144.680, 47.770, 42.680, 90.00, 104.65, 90.00
R / Rfree (%)	19.9 / 23.8

The binding sites of Sodium atom in the The Dehydratase Heterocomplex Apei:P From Xenorhabdus Doucetiae (pdb code 6qsr). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the The Dehydratase Heterocomplex Apei:P From Xenorhabdus Doucetiae, PDB code: 6qsr:

Sodium binding site 1 out of 1 in the The Dehydratase Heterocomplex Apei:P From Xenorhabdus Doucetiae


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of The Dehydratase Heterocomplex Apei:P From Xenorhabdus Doucetiae within 5.0Å range: probe atom residue distance (Å) B Occ B:Na201 b:33.1 occ:1.00 O B:HOH346 2.2 34.3 1.0 O B:HIS19 2.3 26.8 1.0 O B:ASP14 2.4 29.9 1.0 O B:LEU17 2.4 26.0 1.0 O B:HOH327 2.4 34.8 1.0 C B:ASP14 3.5 28.9 1.0 C B:HIS19 3.5 26.3 1.0 C B:LEU17 3.5 24.1 1.0 C B:PRO18 4.0 27.1 1.0 O B:PRO18 4.0 27.7 1.0 CG B:GLU20 4.0 32.1 1.0 N B:HIS19 4.1 27.0 1.0 CA B:ASP14 4.2 30.2 1.0 CB B:ASP14 4.2 34.1 1.0 CA B:LEU17 4.3 24.1 1.0 CB B:LEU17 4.3 21.4 1.0 OD2 B:ASP14 4.4 39.0 1.0 N B:LEU17 4.4 25.9 1.0 N B:GLU20 4.4 26.7 1.0 CA B:HIS19 4.4 24.8 1.0 CA B:PRO18 4.4 26.1 1.0 N B:PRO18 4.4 23.9 1.0 N B:ARG15 4.5 30.6 1.0 CA B:GLU20 4.5 28.9 1.0 CA B:ARG15 4.7 32.1 1.0 CG B:ASP14 4.8 36.8 1.0 O B:HOH343 4.9 29.0 1.0 CB B:GLU20 4.9 30.9 1.0 C B:ARG15 5.0 28.9 1.0

G.L.C.Grammbitter, M.Schmalhofer, K.Karimi, Y.M.Shi, T.A.Schoner, N.J.Tobias, N.Morgner, M.Groll, H.B.Bode. An Uncommon Type II Pks Catalyzes Biosynthesis of Aryl Polyene Pigments. J.Am.Chem.Soc. V. 141 16615 2019.
ISSN: ESSN 1520-5126
PubMed: 30908039
DOI: 10.1021/JACS.8B10776