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Sodium in PDB 6q8r: Hew Lysozyme Under 2 Kbar of Argon

Enzymatic activity of Hew Lysozyme Under 2 Kbar of Argon

All present enzymatic activity of Hew Lysozyme Under 2 Kbar of Argon:
3.2.1.17;

Protein crystallography data

The structure of Hew Lysozyme Under 2 Kbar of Argon, PDB code: 6q8r was solved by T.Prange, P.Carpentier, N.Colloc'h, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.95 / 1.70
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 77.830, 77.830, 37.990, 90.00, 90.00, 90.00
R / Rfree (%) 15.3 / 18.8

Other elements in 6q8r:

The structure of Hew Lysozyme Under 2 Kbar of Argon also contains other interesting chemical elements:

Chlorine (Cl) 12 atoms
Argon (Ar) 8 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Hew Lysozyme Under 2 Kbar of Argon (pdb code 6q8r). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Hew Lysozyme Under 2 Kbar of Argon, PDB code: 6q8r:

Sodium binding site 1 out of 1 in 6q8r

Go back to Sodium Binding Sites List in 6q8r
Sodium binding site 1 out of 1 in the Hew Lysozyme Under 2 Kbar of Argon


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Hew Lysozyme Under 2 Kbar of Argon within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na213

b:10.0
occ:1.00
O A:HOH427 2.3 12.5 1.0
O A:SER60 2.4 10.2 1.0
O A:ARG73 2.4 13.8 1.0
O A:CYS64 2.5 10.2 1.0
O A:HOH390 2.5 12.4 1.0
OG A:SER72 2.5 15.0 1.0
CB A:SER72 3.3 16.4 1.0
C A:CYS64 3.5 8.8 1.0
C A:SER60 3.5 10.7 1.0
C A:ARG73 3.5 14.0 1.0
CA A:ASN65 3.9 10.8 1.0
N A:ARG73 4.0 15.3 1.0
CA A:SER60 4.0 9.5 1.0
N A:ASN65 4.1 9.5 1.0
C A:SER72 4.1 16.4 1.0
CB A:SER60 4.2 9.1 1.0
CA A:SER72 4.4 16.9 1.0
N A:ASN74 4.4 14.2 1.0
CA A:ARG73 4.4 16.4 1.0
N A:CYS64 4.4 8.7 1.0
O A:HOH440 4.5 24.6 1.0
CA A:ASN74 4.6 12.8 1.0
CA A:CYS64 4.6 8.9 1.0
CB A:ASN74 4.6 12.5 1.0
O A:SER72 4.6 17.3 1.0
N A:ARG61 4.6 11.5 1.0
C A:ARG61 4.6 14.7 1.0
OD1 A:ASN65 4.7 12.7 1.0
O A:ARG61 4.7 13.4 1.0
N A:ASP66 4.7 9.8 1.0
CB A:THR69 4.7 11.5 1.0
CL A:CL203 4.8 18.4 1.0
CB A:ASN65 4.8 11.4 1.0
O A:HOH431 4.8 25.7 1.0
N A:TRP62 4.9 11.8 1.0
C A:ASN65 4.9 9.8 1.0
O A:THR69 4.9 13.5 1.0
CA A:ARG61 4.9 14.3 1.0

Reference:

T.Prange, P.Carpentier. Labelling Protein Crystals By Argon at 2 Kbar To Be Published.
Page generated: Tue Dec 15 12:47:51 2020

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