Sodium in PDB 6q50: Structure of Mpt-4, A Mannose Phosphorylase From Leishmania Mexicana, in Complex with Phosphate Ion

The structure of Structure of Mpt-4, A Mannose Phosphorylase From Leishmania Mexicana, in Complex with Phosphate Ion, PDB code: 6q50 was solved by L.F.Sobala, A.Males, L.M.Bastidas, T.Ward, M.F.Sernee, J.E.Ralton, T.L.Nero, S.Cobbold, J.Kloehn, M.Viera-Lara, L.Stanton, E.Hanssen, M.W.Parker, S.J.Williams, M.J.Mcconville, G.J.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	67.28 / 1.60
Space group	P 21 2 21
Cell size a, b, c (Å), α, β, γ (°)	53.366, 67.194, 96.970, 90.00, 90.00, 90.00
R / Rfree (%)	16 / 20

The binding sites of Sodium atom in the Structure of Mpt-4, A Mannose Phosphorylase From Leishmania Mexicana, in Complex with Phosphate Ion (pdb code 6q50). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Mpt-4, A Mannose Phosphorylase From Leishmania Mexicana, in Complex with Phosphate Ion, PDB code: 6q50:

Sodium binding site 1 out of 1 in the Structure of Mpt-4, A Mannose Phosphorylase From Leishmania Mexicana, in Complex with Phosphate Ion


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Mpt-4, A Mannose Phosphorylase From Leishmania Mexicana, in Complex with Phosphate Ion within 5.0Å range: probe atom residue distance (Å) B Occ A:Na403 b:35.6 occ:0.70 O1 A:PO4401 2.7 24.3 1.0 OD2 A:ASP83 2.8 22.5 1.0 O A:HOH703 3.0 38.7 1.0 O A:HOH511 3.0 31.3 1.0 O A:HOH660 3.0 26.6 0.5 O A:HOH509 3.1 37.3 1.0 NZ A:LYS133 3.2 31.0 1.0 CD A:LYS133 3.3 29.0 1.0 O A:HOH660 3.5 16.2 0.5 O3 A:PO4401 3.5 24.5 1.0 P A:PO4401 3.6 23.9 1.0 OG A:SER-17 3.8 46.2 1.0 CE A:LYS133 3.8 29.6 1.0 CG A:ASP83 4.1 19.4 1.0 CE1 A:PHE265 4.1 18.4 1.0 CZ A:PHE265 4.2 17.1 1.0 O2 A:PO4401 4.2 23.2 1.0 O A:HOH537 4.3 31.3 1.0 OD1 A:ASP134 4.4 30.2 1.0 O A:HOH689 4.4 28.9 1.0 CG A:LYS133 4.6 26.1 1.0 OD2 A:ASP134 4.7 28.6 1.0 OD1 A:ASP83 4.9 19.1 1.0 CD1 A:PHE265 5.0 18.2 1.0

M.F.Sernee, J.E.Ralton, T.L.Nero, L.F.Sobala, J.Kloehn, M.A.Vieira-Lara, S.A.Cobbold, L.Stanton, D.E.V.Pires, E.Hanssen, A.Males, T.Ward, L.M.Bastidas, P.L.Van Der Peet, M.W.Parker, D.B.Ascher, S.J.Williams, G.J.Davies, M.J.Mcconville. A Family of Dual-Activity Glycosyltransferase-Phosphorylases Mediates Mannogen Turnover and Virulence in Leishmania Parasites. Cell Host Microbe V. 26 385 2019.
ISSN: ESSN 1934-6069
PubMed: 31513773
DOI: 10.1016/J.CHOM.2019.08.009