Sodium in PDB 6plj: A Nucleotidyl Transferase From Methanothermobacter Thermautotroptrophicus (MTH528)

The structure of A Nucleotidyl Transferase From Methanothermobacter Thermautotroptrophicus (MTH528), PDB code: 6plj was solved by V.Carbone, L.Schofield, A.Sutherland-Smith, R.Ronimus, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.79 / 1.59
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	50.656, 61.418, 72.227, 90.00, 90.00, 90.00
R / Rfree (%)	17.1 / 20.2

The structure of A Nucleotidyl Transferase From Methanothermobacter Thermautotroptrophicus (MTH528) also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Sodium atom in the A Nucleotidyl Transferase From Methanothermobacter Thermautotroptrophicus (MTH528) (pdb code 6plj). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the A Nucleotidyl Transferase From Methanothermobacter Thermautotroptrophicus (MTH528), PDB code: 6plj:

Sodium binding site 1 out of 1 in the A Nucleotidyl Transferase From Methanothermobacter Thermautotroptrophicus (MTH528)


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of A Nucleotidyl Transferase From Methanothermobacter Thermautotroptrophicus (MTH528) within 5.0Å range: probe atom residue distance (Å) B Occ A:Na309 b:24.9 occ:1.00 O A:HOH506 2.5 32.2 1.0 O A:ASP21 2.9 12.7 1.0 CA A:ASP21 3.6 12.1 1.0 C A:ASP21 3.6 12.5 1.0 CG A:LEU25 3.7 16.3 1.0 CB A:ASP21 3.8 12.0 1.0 CD1 A:LEU25 3.8 16.1 1.0 CB A:GLU24 4.0 18.6 1.0 CG A:ASP21 4.2 12.5 1.0 OD1 A:ASP21 4.2 12.9 1.0 N A:LEU25 4.3 16.0 1.0 CD2 A:LEU25 4.4 16.8 1.0 C A:GLU24 4.5 16.8 1.0 O A:HOH530 4.5 14.4 1.0 OE1 A:GLU24 4.5 26.5 1.0 CA A:GLU24 4.7 16.9 1.0 CB A:LEU25 4.7 16.1 1.0 O A:GLU24 4.9 18.4 1.0 N A:MET22 4.9 12.4 1.0 N A:ASP21 5.0 12.0 1.0

V.Carbone, L.Schofield, A.Sutherland-Smith, R.Ronimus. A Nucleotidyl Transferase From Methanothermobacter Thermautotroptrophicus (MTH528) To Be Published.