Sodium in PDB 6pgw: Crystal Structure of Zebrafish Protocadherin-19 EC3-6

The structure of Crystal Structure of Zebrafish Protocadherin-19 EC3-6, PDB code: 6pgw was solved by S.R.Cooper, J.D.Hudson, M.Sotomayor, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	50.00 / 3.00
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	69.92, 58.896, 70.956, 90, 117.97, 90
R / Rfree (%)	21.5 / 29.8

The structure of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 also contains other interesting chemical elements:

Calcium

(Ca)

9 atoms

The binding sites of Sodium atom in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6 (pdb code 6pgw). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6, PDB code: 6pgw:

Sodium binding site 1 out of 1 in the Crystal Structure of Zebrafish Protocadherin-19 EC3-6


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Zebrafish Protocadherin-19 EC3-6 within 5.0Å range: probe atom residue distance (Å) B Occ A:Na710 b:64.4 occ:1.00 O A:THR272 2.2 66.7 1.0 OD1 A:ASP236 2.2 62.4 1.0 O A:HOH815 2.2 59.5 1.0 O A:LEU237 2.2 64.9 1.0 CG A:ASP236 3.3 62.0 1.0 C A:LEU237 3.4 65.2 1.0 C A:THR272 3.4 70.3 1.0 OD2 A:ASP236 3.7 64.1 1.0 O A:GLY273 3.8 65.8 1.0 C A:GLY273 4.1 65.7 1.0 CA A:GLY273 4.1 66.6 1.0 N A:ASN238 4.2 71.2 1.0 CA A:ASN238 4.2 76.5 1.0 N A:LEU237 4.2 59.7 1.0 N A:GLY273 4.2 68.0 1.0 CB A:ASN238 4.3 81.0 1.0 O A:HOH808 4.3 53.3 1.0 CG2 A:VAL274 4.4 62.6 1.0 CA A:LEU237 4.4 60.5 1.0 C A:ASP236 4.4 59.6 1.0 CA A:THR272 4.5 73.6 1.0 CB A:ASP236 4.6 60.8 1.0 CA A:ASP236 4.8 58.1 1.0 OH A:TYR252 4.8 49.6 1.0 N A:VAL274 4.9 63.6 1.0 O A:ASP236 4.9 60.4 1.0 CB A:THR272 5.0 73.8 1.0

S.R.Cooper, J.D.Hudson, M.Sotomayor. Crystal Structure of Zebrafish Protocadherin-19 EC3-6 To Be Published.