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Sodium in PDB 6p9l: Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx

Enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx

All present enzymatic activity of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx:
2.3.1.41;

Protein crystallography data

The structure of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx, PDB code: 6p9l was solved by G.C.Capodagli, M.B.Neiditch, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.52 / 2.31
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 77.804, 77.804, 146.374, 90.00, 90.00, 120.00
R / Rfree (%) 17.1 / 20.4

Other elements in 6p9l:

The structure of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx also contains other interesting chemical elements:

Fluorine (F) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx (pdb code 6p9l). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx, PDB code: 6p9l:

Sodium binding site 1 out of 1 in 6p9l

Go back to Sodium Binding Sites List in 6p9l
Sodium binding site 1 out of 1 in the Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of Mycobacterium Tuberculosis Kasa in Complex with Jfx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na502

b:55.5
occ:1.00
 OE2 A:GLU354 2.3 59.3 1.0
OD1 A:ASN399 2.4 50.7 1.0
OD1 A:ASN309 2.5 60.8 1.0
O A:ASN309 2.5 49.3 1.0
O A:ALA310 2.6 50.8 1.0
O A:ASN400 2.9 51.2 1.0
C A:ALA310 3.1 52.8 1.0
C A:ASN309 3.1 53.9 1.0
CD A:GLU354 3.3 58.1 1.0
CG A:ASN309 3.4 56.2 1.0
CG A:ASN399 3.6 52.5 1.0
N A:ASN400 3.6 49.3 1.0
N A:HIS311 3.7 57.2 1.0
N A:ALA310 3.7 48.5 1.0
CB A:GLU354 3.7 43.6 1.0
CB A:ASN309 3.8 51.1 1.0
CA A:ALA310 3.9 50.4 1.0
C A:ASN400 3.9 48.3 1.0
CA A:HIS311 4.1 53.1 1.0
CA A:ASN309 4.1 54.0 1.0
CG A:GLU354 4.1 45.4 1.0
OE1 A:GLU354 4.2 58.0 1.0
CA A:ASN400 4.3 48.2 1.0
ND2 A:ASN399 4.3 52.1 1.0
C A:ASN399 4.4 51.0 1.0
O A:HOH661 4.5 65.6 1.0
CA A:ASN399 4.5 52.0 1.0
CB A:ASN399 4.6 49.1 1.0
ND2 A:ASN309 4.6 53.0 1.0
CB A:ASN400 4.7 54.1 1.0
OG A:SER401 4.8 52.4 0.6
CD A:PRO339 4.9 51.8 1.0
C A:HIS311 5.0 52.8 1.0
CG A:PRO339 5.0 51.2 1.0

Reference:

D.Inoyama, D.Awasthi, G.C.Capodagli, K.Tsotetsi, P.Sukheja, M.Zimmerman, S.G.Li, R.Jadhav, R.Russo, X.Wang, C.Grady, T.Richmann, R.Shrestha, L.Li, Y.M.Ahn, H.P.Ho Liang, M.Mina, S.Park, D.S.Perlin, N.Connell, V.Dartois, D.Alland, M.B.Neiditch, P.Kumar, J.S.Freundlich. A Preclinical Candidate Targeting Mycobacterium Tuberculosis Kasa. Cell Chem Biol 2020.
ISSN: ESSN 2451-9456
PubMed: 32197094
DOI: 10.1016/J.CHEMBIOL.2020.02.007
Page generated: Tue Oct 8 12:42:13 2024

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