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Sodium in PDB 6mxs: Crystal Structure of the Dimeric BH1-Fab Variant [Hc-Y33W,Hc-D98F,Hc- G99M]

Protein crystallography data

The structure of Crystal Structure of the Dimeric BH1-Fab Variant [Hc-Y33W,Hc-D98F,Hc- G99M], PDB code: 6mxs was solved by R.Shi, M.-E.Picard, M.S.Manenda, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 1.95
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 65.679, 95.960, 110.110, 90.00, 103.68, 90.00
R / Rfree (%) 19.1 / 22.9

Other elements in 6mxs:

The structure of Crystal Structure of the Dimeric BH1-Fab Variant [Hc-Y33W,Hc-D98F,Hc- G99M] also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Crystal Structure of the Dimeric BH1-Fab Variant [Hc-Y33W,Hc-D98F,Hc- G99M] (pdb code 6mxs). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Crystal Structure of the Dimeric BH1-Fab Variant [Hc-Y33W,Hc-D98F,Hc- G99M], PDB code: 6mxs:

Sodium binding site 1 out of 1 in 6mxs

Go back to Sodium Binding Sites List in 6mxs
Sodium binding site 1 out of 1 in the Crystal Structure of the Dimeric BH1-Fab Variant [Hc-Y33W,Hc-D98F,Hc- G99M]


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Crystal Structure of the Dimeric BH1-Fab Variant [Hc-Y33W,Hc-D98F,Hc- G99M] within 5.0Å range:
probe atom residue distance (Å) B Occ
L:Na302

b:24.9
occ:1.00
OG L:SER203 2.5 18.8 1.0
O L:HOH588 2.5 29.5 1.0
O L:HOH452 2.6 22.0 1.0
CB L:SER203 3.5 17.3 1.0
O L:HOH436 4.0 26.3 1.0
O L:PRO204 4.3 18.6 1.0
CA L:SER203 4.8 18.5 1.0
C L:SER203 4.9 19.5 1.0
O L:HOH420 4.9 39.8 1.0

Reference:

J.D.Schrag, M.E.Picard, F.Gaudreault, L.P.Gagnon, J.Baardsnes, M.S.Manenda, J.Sheff, C.Deprez, C.Baptista, H.Hogues, J.F.Kelly, E.O.Purisima, R.Shi, T.Sulea. Binding Symmetry and Surface Flexibility Mediate Antibody Self-Association. Mabs V. 11 1300 2019.
ISSN: ESSN 1942-0870
PubMed: 31318308
DOI: 10.1080/19420862.2019.1632114
Page generated: Tue Dec 15 12:37:17 2020

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