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Sodium in PDB 6muz: Lysozyme, Room Temperature Structure Solved By Serial 3 Degree Oscillation Crystallography

Enzymatic activity of Lysozyme, Room Temperature Structure Solved By Serial 3 Degree Oscillation Crystallography

All present enzymatic activity of Lysozyme, Room Temperature Structure Solved By Serial 3 Degree Oscillation Crystallography:
3.2.1.17;

Protein crystallography data

The structure of Lysozyme, Room Temperature Structure Solved By Serial 3 Degree Oscillation Crystallography, PDB code: 6muz was solved by A.D.Finke, J.L.Wierman, O.Pare-Labrosse, A.Sarrachini, J.Besaw, I.Kriksunov, S.M.Gruner, R.J.D.Miller, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 39.55 / 1.84
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 79.100, 79.100, 38.020, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 20.4

Other elements in 6muz:

The structure of Lysozyme, Room Temperature Structure Solved By Serial 3 Degree Oscillation Crystallography also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms

Sodium Binding Sites:

The binding sites of Sodium atom in the Lysozyme, Room Temperature Structure Solved By Serial 3 Degree Oscillation Crystallography (pdb code 6muz). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Lysozyme, Room Temperature Structure Solved By Serial 3 Degree Oscillation Crystallography, PDB code: 6muz:

Sodium binding site 1 out of 1 in 6muz

Go back to Sodium Binding Sites List in 6muz
Sodium binding site 1 out of 1 in the Lysozyme, Room Temperature Structure Solved By Serial 3 Degree Oscillation Crystallography


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Lysozyme, Room Temperature Structure Solved By Serial 3 Degree Oscillation Crystallography within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na203

b:24.5
occ:1.00
 O A:SER60 2.3 23.1 1.0
O A:CYS64 2.4 21.0 1.0
O A:HOH324 2.5 23.2 1.0
OG A:SER72 2.5 27.2 1.0
O A:HOH316 2.5 32.0 1.0
O A:ARG73 2.6 30.4 1.0
CB A:SER72 3.2 27.2 1.0
C A:CYS64 3.5 23.8 1.0
C A:SER60 3.5 19.8 1.0
C A:ARG73 3.6 33.6 1.0
N A:ARG73 3.9 29.2 1.0
CA A:ASN65 3.9 20.3 1.0
C A:SER72 4.1 35.1 1.0
N A:ASN65 4.1 20.0 1.0
CA A:SER60 4.2 16.3 1.0
CA A:SER72 4.2 30.8 1.0
N A:CYS64 4.4 15.9 1.0
CA A:ARG73 4.4 31.1 1.0
CB A:SER60 4.4 16.2 1.0
O A:ARG61 4.4 26.2 1.0
C A:ARG61 4.4 26.7 1.0
N A:ASN74 4.5 25.1 1.0
N A:ARG61 4.6 18.7 1.0
CA A:CYS64 4.6 20.2 1.0
O A:SER72 4.6 29.5 1.0
CA A:ASN74 4.6 23.7 1.0
N A:ASP66 4.7 18.5 1.0
CA A:ARG61 4.7 26.5 1.0
CB A:THR69 4.7 20.3 1.0
OD1 A:ASN65 4.7 34.4 1.0
N A:TRP62 4.8 26.2 1.0
O A:HOH338 4.8 23.8 1.0
C A:ASN65 4.9 17.5 1.0
CB A:ASN65 4.9 16.6 1.0
CB A:ASN74 4.9 23.7 1.0
N A:TRP63 4.9 19.6 1.0
O A:THR69 5.0 32.9 1.0

Reference:

J.L.Wierman, O.Pare-Labrosse, A.Sarracini, J.E.Besaw, M.J.Cook, S.Oghbaey, H.Daoud, P.Mehrabi, I.Kriksunov, A.Kuo, D.J.Schuller, S.Smith, O.P.Ernst, D.M.E.Szebenyi, S.M.Gruner, R.J.D.Miller, A.D.Finke. Fixed-Target Serial Oscillation Crystallography at Room Temperature. Iucrj V. 6 305 2019.
ISSN: ESSN 2052-2525
PubMed: 30867928
DOI: 10.1107/S2052252519001453
Page generated: Tue Dec 15 12:37:00 2020

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