Atomistry » Sodium » PDB 6mec-6myk » 6mqv
Atomistry »
  Sodium »
    PDB 6mec-6myk »
      6mqv »

Sodium in PDB 6mqv: Structure of Hewl From Lcp Injector Using Synchrotron Radiation

Enzymatic activity of Structure of Hewl From Lcp Injector Using Synchrotron Radiation

All present enzymatic activity of Structure of Hewl From Lcp Injector Using Synchrotron Radiation:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hewl From Lcp Injector Using Synchrotron Radiation, PDB code: 6mqv was solved by T.T.Caradoc-Davies, J.Aishima, P.Berntsen, M.Hadian-Jazi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.64 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.680, 78.680, 38.480, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 24.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Hewl From Lcp Injector Using Synchrotron Radiation (pdb code 6mqv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hewl From Lcp Injector Using Synchrotron Radiation, PDB code: 6mqv:

Sodium binding site 1 out of 1 in 6mqv

Go back to Sodium Binding Sites List in 6mqv
Sodium binding site 1 out of 1 in the Structure of Hewl From Lcp Injector Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hewl From Lcp Injector Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:69.3
occ:1.00
O A:SER60 2.3 47.4 1.0
O A:CYS64 2.4 43.2 1.0
O A:ARG73 2.5 58.5 1.0
OG A:SER72 2.6 71.9 1.0
O A:HOH327 2.7 43.8 1.0
CB A:SER72 3.2 64.4 1.0
C A:ARG73 3.4 57.5 1.0
C A:CYS64 3.4 43.6 1.0
C A:SER60 3.5 48.8 1.0
N A:ARG73 3.8 55.4 1.0
C A:SER72 3.8 61.5 1.0
CA A:ASN65 3.9 43.2 1.0
N A:ASN65 4.1 42.4 1.0
CA A:SER72 4.1 61.3 1.0
O A:ARG61 4.2 51.0 1.0
O A:SER72 4.2 60.5 1.0
N A:ASN74 4.2 51.6 1.0
C A:ARG61 4.2 51.7 1.0
CA A:ARG73 4.2 54.6 1.0
N A:CYS64 4.3 38.0 1.0
CA A:ASN74 4.3 48.9 1.0
CA A:SER60 4.3 41.2 1.0
N A:ARG61 4.4 47.7 1.0
CA A:CYS64 4.5 38.5 1.0
CB A:ASN74 4.5 44.8 1.0
CA A:ARG61 4.5 49.0 1.0
N A:TRP62 4.6 47.5 1.0
CB A:ASN65 4.6 47.1 1.0
CB A:SER60 4.7 41.1 1.0
OD1 A:ASN65 4.8 60.4 1.0
C A:TRP62 4.9 46.6 1.0
N A:TRP63 4.9 40.1 1.0
O A:HOH340 4.9 49.8 1.0
CB A:THR69 5.0 50.7 1.0

Reference:

P.Berntsen, M.Hadian Jazi, M.Kusel, A.V.Martin, T.Ericsson, M.J.Call, R.Trenker, F.G.Roque, C.Darmanin, B.Abbey. The Serial Millisecond Crystallography Instrument at the Australian Synchrotron Incorporating the "Lipidico" Injector. Rev Sci Instrum V. 90 85110 2019.
ISSN: ISSN 1089-7623
PubMed: 31472610
DOI: 10.1063/1.5104298
Page generated: Tue Oct 8 12:01:08 2024

Last articles

Ca in 2ZAG
Ca in 2ZAH
Ca in 2Z8S
Ca in 2Z8R
Ca in 2Z6M
Ca in 2Z6I
Ca in 2Z70
Ca in 2Z58
Ca in 2Z6J
Ca in 2Z57
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy