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Sodium in PDB 6mqv: Structure of Hewl From Lcp Injector Using Synchrotron Radiation

Enzymatic activity of Structure of Hewl From Lcp Injector Using Synchrotron Radiation

All present enzymatic activity of Structure of Hewl From Lcp Injector Using Synchrotron Radiation:
3.2.1.17;

Protein crystallography data

The structure of Structure of Hewl From Lcp Injector Using Synchrotron Radiation, PDB code: 6mqv was solved by T.T.Caradoc-Davies, J.Aishima, P.Berntsen, M.Hadian-Jazi, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 55.64 / 2.00
Space group P 43 21 2
Cell size a, b, c (Å), α, β, γ (°) 78.680, 78.680, 38.480, 90.00, 90.00, 90.00
R / Rfree (%) 19.5 / 24.9

Sodium Binding Sites:

The binding sites of Sodium atom in the Structure of Hewl From Lcp Injector Using Synchrotron Radiation (pdb code 6mqv). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total only one binding site of Sodium was determined in the Structure of Hewl From Lcp Injector Using Synchrotron Radiation, PDB code: 6mqv:

Sodium binding site 1 out of 1 in 6mqv

Go back to Sodium Binding Sites List in 6mqv
Sodium binding site 1 out of 1 in the Structure of Hewl From Lcp Injector Using Synchrotron Radiation


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of Structure of Hewl From Lcp Injector Using Synchrotron Radiation within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na201

b:69.3
occ:1.00
O A:SER60 2.3 47.4 1.0
O A:CYS64 2.4 43.2 1.0
O A:ARG73 2.5 58.5 1.0
OG A:SER72 2.6 71.9 1.0
O A:HOH327 2.7 43.8 1.0
CB A:SER72 3.2 64.4 1.0
C A:ARG73 3.4 57.5 1.0
C A:CYS64 3.4 43.6 1.0
C A:SER60 3.5 48.8 1.0
N A:ARG73 3.8 55.4 1.0
C A:SER72 3.8 61.5 1.0
CA A:ASN65 3.9 43.2 1.0
N A:ASN65 4.1 42.4 1.0
CA A:SER72 4.1 61.3 1.0
O A:ARG61 4.2 51.0 1.0
O A:SER72 4.2 60.5 1.0
N A:ASN74 4.2 51.6 1.0
C A:ARG61 4.2 51.7 1.0
CA A:ARG73 4.2 54.6 1.0
N A:CYS64 4.3 38.0 1.0
CA A:ASN74 4.3 48.9 1.0
CA A:SER60 4.3 41.2 1.0
N A:ARG61 4.4 47.7 1.0
CA A:CYS64 4.5 38.5 1.0
CB A:ASN74 4.5 44.8 1.0
CA A:ARG61 4.5 49.0 1.0
N A:TRP62 4.6 47.5 1.0
CB A:ASN65 4.6 47.1 1.0
CB A:SER60 4.7 41.1 1.0
OD1 A:ASN65 4.8 60.4 1.0
C A:TRP62 4.9 46.6 1.0
N A:TRP63 4.9 40.1 1.0
O A:HOH340 4.9 49.8 1.0
CB A:THR69 5.0 50.7 1.0

Reference:

P.Berntsen, M.Hadian Jazi, M.Kusel, A.V.Martin, T.Ericsson, M.J.Call, R.Trenker, F.G.Roque, C.Darmanin, B.Abbey. The Serial Millisecond Crystallography Instrument at the Australian Synchrotron Incorporating the "Lipidico" Injector. Rev Sci Instrum V. 90 85110 2019.
ISSN: ISSN 1089-7623
PubMed: 31472610
DOI: 10.1063/1.5104298
Page generated: Tue Dec 15 12:36:47 2020

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