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Sodium in PDB 6mq1: B. Pseudomallei Katg Crystalized in the Presence of Abts

Enzymatic activity of B. Pseudomallei Katg Crystalized in the Presence of Abts

All present enzymatic activity of B. Pseudomallei Katg Crystalized in the Presence of Abts:
1.11.1.21;

Protein crystallography data

The structure of B. Pseudomallei Katg Crystalized in the Presence of Abts, PDB code: 6mq1 was solved by P.C.Loewen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 28.56 / 2.50
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 100.060, 113.710, 173.540, 90.00, 90.00, 90.00
R / Rfree (%) 20.9 / 27.7

Other elements in 6mq1:

The structure of B. Pseudomallei Katg Crystalized in the Presence of Abts also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the B. Pseudomallei Katg Crystalized in the Presence of Abts (pdb code 6mq1). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the B. Pseudomallei Katg Crystalized in the Presence of Abts, PDB code: 6mq1:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 6mq1

Go back to Sodium Binding Sites List in 6mq1
Sodium binding site 1 out of 2 in the B. Pseudomallei Katg Crystalized in the Presence of Abts


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of B. Pseudomallei Katg Crystalized in the Presence of Abts within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na802

b:28.9
occ:1.00
O A:HOH1110 2.2 21.5 1.0
O A:GLY124 2.2 27.9 1.0
O A:SER494 2.2 25.5 1.0
O A:GLY122 2.2 27.7 1.0
O A:HOH1241 2.4 40.1 1.0
C A:SER494 3.1 24.7 1.0
C A:GLY122 3.4 29.9 1.0
C A:GLY124 3.4 32.5 1.0
C A:ARG123 3.5 32.5 1.0
CA A:ARG123 3.5 32.5 1.0
N A:GLY124 3.6 31.5 1.0
N A:ARG123 3.9 31.4 1.0
O A:HOH1094 3.9 21.4 1.0
CA A:SER494 3.9 24.1 1.0
O A:ARG123 4.0 29.5 1.0
N A:ASP495 4.0 25.6 1.0
CB A:ASP427 4.1 30.1 1.0
CA A:GLY124 4.1 31.7 1.0
O A:HOH1278 4.2 24.2 1.0
OD2 A:ASP427 4.2 33.5 1.0
CA A:ASP495 4.2 27.1 1.0
CB A:SER494 4.3 26.2 1.0
CB A:ASP495 4.3 26.7 1.0
OE2 A:GLU128 4.4 48.1 1.0
N A:GLY125 4.5 27.8 1.0
OE2 A:GLU198 4.5 51.2 1.0
CD1 A:TYR117 4.6 23.9 1.0
CA A:GLY122 4.6 31.0 1.0
CG A:ASP427 4.7 33.7 1.0
OG A:SER494 4.8 25.6 1.0
CA A:GLY125 4.8 26.0 1.0
CB A:ARG123 4.9 34.5 1.0
CE1 A:TYR117 4.9 25.6 1.0

Sodium binding site 2 out of 2 in 6mq1

Go back to Sodium Binding Sites List in 6mq1
Sodium binding site 2 out of 2 in the B. Pseudomallei Katg Crystalized in the Presence of Abts


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of B. Pseudomallei Katg Crystalized in the Presence of Abts within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na802

b:25.7
occ:1.00
O B:HOH960 2.2 19.5 1.0
O B:GLY122 2.2 25.4 1.0
O B:SER494 2.2 21.1 1.0
O B:GLY124 2.3 31.0 1.0
O B:HOH1300 2.3 16.2 1.0
C B:SER494 3.0 22.5 1.0
C B:GLY122 3.3 24.4 1.0
C B:ARG123 3.4 27.4 1.0
CA B:ARG123 3.5 26.4 1.0
C B:GLY124 3.5 29.9 1.0
N B:GLY124 3.7 34.0 1.0
N B:ARG123 3.8 25.6 1.0
CA B:SER494 3.8 24.2 1.0
N B:ASP495 3.9 22.9 1.0
O B:ARG123 4.0 27.2 1.0
OD2 B:ASP427 4.0 24.4 1.0
O B:HOH1401 4.1 26.7 1.0
CB B:ASP427 4.1 24.6 1.0
CA B:GLY124 4.2 34.5 1.0
CB B:SER494 4.2 25.5 1.0
CA B:ASP495 4.2 20.9 1.0
O B:HOH1097 4.3 27.2 1.0
CB B:ASP495 4.4 21.5 1.0
OE2 B:GLU198 4.5 58.0 1.0
N B:GLY125 4.5 25.8 1.0
CG B:ASP427 4.6 23.0 1.0
CA B:GLY122 4.6 25.9 1.0
CD1 B:TYR117 4.7 28.4 1.0
OE2 B:GLU128 4.7 41.5 1.0
CA B:GLY125 4.8 26.2 1.0
CB B:ARG123 4.9 27.7 1.0
OE1 B:GLU198 4.9 35.0 1.0

Reference:

P.C.Loewen, P.C.Loewen. N/A N/A.
Page generated: Tue Dec 15 12:36:37 2020

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