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Sodium in PDB 6mq0: B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide

Enzymatic activity of B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide

All present enzymatic activity of B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide:
1.11.1.21;

Protein crystallography data

The structure of B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide, PDB code: 6mq0 was solved by P.C.Loewen, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 35.21 / 1.90
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 100.460, 115.430, 174.600, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 17.4

Other elements in 6mq0:

The structure of B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide also contains other interesting chemical elements:

Iron (Fe) 2 atoms
Chlorine (Cl) 1 atom

Sodium Binding Sites:

The binding sites of Sodium atom in the B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide (pdb code 6mq0). This binding sites where shown within 5.0 Angstroms radius around Sodium atom.
In total 2 binding sites of Sodium where determined in the B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide, PDB code: 6mq0:
Jump to Sodium binding site number: 1; 2;

Sodium binding site 1 out of 2 in 6mq0

Go back to Sodium Binding Sites List in 6mq0
Sodium binding site 1 out of 2 in the B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 1 of B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Na802

b:16.8
occ:1.00
O A:GLY124 2.3 16.6 1.0
O A:SER494 2.3 16.8 1.0
O A:GLY122 2.3 17.0 1.0
O A:HOH1109 2.3 18.3 1.0
O A:HOH1004 2.4 17.3 1.0
C A:SER494 3.2 16.0 1.0
C A:GLY124 3.5 15.7 1.0
C A:GLY122 3.5 16.0 1.0
C A:ARG123 3.6 15.9 1.0
N A:GLY124 3.6 15.0 1.0
CA A:ARG123 3.6 16.4 1.0
O A:HOH1417 3.9 17.6 1.0
CA A:SER494 3.9 15.5 1.0
OD2 A:ASP427 4.0 14.8 1.0
O A:HOH987 4.0 28.2 1.0
N A:ARG123 4.0 16.0 1.0
N A:ASP495 4.1 16.2 1.0
CB A:ASP427 4.1 16.1 1.0
CA A:GLY124 4.1 16.6 1.0
O A:ARG123 4.2 14.4 1.0
CB A:SER494 4.2 15.7 1.0
CA A:ASP495 4.4 16.2 1.0
CB A:ASP495 4.5 16.3 1.0
CG A:ASP427 4.6 16.4 1.0
N A:GLY125 4.6 14.8 1.0
CD1 A:TYR117 4.6 18.2 1.0
CA A:GLY122 4.7 15.8 1.0
OE1 A:GLU198 4.8 24.3 1.0
OE2 A:GLU198 4.8 46.4 1.0
CE1 A:TYR117 4.9 17.6 1.0
OE2 A:GLU128 4.9 33.5 1.0
CA A:GLY125 4.9 15.3 1.0
CB A:ARG123 4.9 17.3 1.0

Sodium binding site 2 out of 2 in 6mq0

Go back to Sodium Binding Sites List in 6mq0
Sodium binding site 2 out of 2 in the B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide


Mono view


Stereo pair view

A full contact list of Sodium with other atoms in the Na binding site number 2 of B. Pseudomallei Katg Crystallized in the Presence of Furoyl Hydrazide within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Na802

b:16.6
occ:1.00
O B:HOH976 2.3 21.2 1.0
O B:GLY122 2.3 14.3 1.0
O B:GLY124 2.3 14.5 1.0
O B:SER494 2.3 15.5 1.0
O B:HOH1160 2.4 20.6 1.0
C B:SER494 3.2 16.3 1.0
C B:GLY122 3.5 14.8 1.0
C B:GLY124 3.5 15.3 1.0
N B:GLY124 3.5 15.5 1.0
C B:ARG123 3.5 14.9 1.0
CA B:ARG123 3.6 15.1 1.0
CA B:SER494 3.9 15.6 1.0
O B:HOH1469 4.0 19.2 1.0
N B:ARG123 4.0 14.6 1.0
OD2 B:ASP427 4.0 17.8 1.0
O B:HOH1070 4.0 23.5 1.0
N B:ASP495 4.1 16.0 1.0
O B:ARG123 4.1 14.2 1.0
CA B:GLY124 4.1 14.6 1.0
CB B:ASP427 4.1 19.4 1.0
CB B:SER494 4.1 15.4 1.0
CA B:ASP495 4.4 14.9 1.0
CB B:ASP495 4.5 14.8 1.0
OE2 B:GLU198 4.6 39.5 1.0
CD1 B:TYR117 4.6 16.7 1.0
CG B:ASP427 4.6 19.0 1.0
N B:GLY125 4.6 15.1 1.0
CA B:GLY122 4.7 16.1 1.0
CE1 B:TYR117 4.9 16.0 1.0
CB B:ARG123 4.9 14.8 1.0
OE1 B:GLU198 4.9 25.5 1.0
OE2 B:GLU128 4.9 31.2 1.0
OG B:SER494 4.9 15.6 1.0
CA B:GLY125 5.0 14.3 1.0

Reference:

P.C.Loewen, P.C.Loewen. N/A N/A.
Page generated: Tue Dec 15 12:36:35 2020

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